Analysis of interatomic Contacts of Structural Units in PDB entry:
9G40

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G40 entry

There are 5 chains in PDB entry 9G40 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	VAL 248	ARG 897
G	SER 2	ARG 879
X	ALA 33	GLY 80
u	ARG 58	GLU 91
v	ARG 58	GLU 91

There are 68 helices in PDB entry 9G40. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	249	262	Right-handed alpha
Helix 2	AA2	F	281	285	Right-handed 310
Helix 3	AA3	F	287	316	Right-handed alpha
Helix 4	AA4	F	321	350	Right-handed alpha
Helix 5	AA5	F	366	389	Right-handed alpha
Helix 6	AA6	F	396	405	Right-handed alpha
Helix 7	AA7	F	411	439	Right-handed alpha
Helix 8	AA8	F	461	466	Right-handed alpha
Helix 9	AA9	F	470	474	Right-handed 310
Helix 10	AB1	F	479	499	Right-handed alpha
Helix 11	AB2	F	532	556	Right-handed alpha
Helix 12	AB3	F	557	569	Right-handed alpha
Helix 13	AB4	F	573	589	Right-handed alpha
Helix 14	AB5	F	591	595	Right-handed 310
Helix 15	AB6	F	596	611	Right-handed alpha
Helix 16	AB7	F	617	623	Right-handed alpha
Helix 17	AB8	F	636	640	Right-handed alpha
Helix 18	AB9	F	648	655	Right-handed alpha
Helix 19	AC1	F	656	694	Right-handed alpha
Helix 20	AC2	F	700	729	Right-handed alpha
Helix 21	AC3	F	731	744	Right-handed alpha
Helix 22	AC4	F	746	765	Right-handed alpha
Helix 23	AC5	F	771	819	Right-handed alpha
Helix 24	AC6	F	825	869	Right-handed alpha
Helix 25	AC7	F	874	883	Right-handed alpha
Helix 26	AC8	F	893	897	Right-handed 310
Helix 27	AC9	G	4	18	Right-handed alpha
Helix 28	AD1	G	25	34	Right-handed alpha
Helix 29	AD2	G	45	57	Right-handed alpha
Helix 30	AD3	G	59	74	Right-handed alpha
Helix 31	AD4	G	77	89	Right-handed alpha
Helix 32	AD5	G	91	116	Right-handed alpha
Helix 33	AD6	G	149	170	Right-handed alpha
Helix 34	AD7	G	178	182	Right-handed 310
Helix 35	AD8	G	209	225	Right-handed alpha
Helix 36	AD9	G	253	264	Right-handed alpha
Helix 37	AE1	G	264	280	Right-handed alpha
Helix 38	AE2	G	281	284	Right-handed 310
Helix 39	AE3	G	285	316	Right-handed alpha
Helix 40	AE4	G	320	349	Right-handed alpha
Helix 41	AE5	G	352	366	Right-handed alpha
Helix 42	AE6	G	369	396	Right-handed alpha
Helix 43	AE7	G	415	422	Right-handed alpha
Helix 44	AE8	G	440	445	Right-handed 310
Helix 45	AE9	G	446	463	Right-handed alpha
Helix 46	AF1	G	481	505	Right-handed alpha
Helix 47	AF2	G	508	519	Right-handed alpha
Helix 48	AF3	G	524	540	Right-handed alpha
Helix 49	AF4	G	542	546	Right-handed 310
Helix 50	AF5	G	547	561	Right-handed alpha
Helix 51	AF6	G	581	591	Right-handed alpha
Helix 52	AF7	G	604	608	Right-handed 310
Helix 53	AF8	G	631	662	Right-handed alpha
Helix 54	AF9	G	663	667	Right-handed 310
Helix 55	AG1	G	673	677	Right-handed 310
Helix 56	AG2	G	678	699	Right-handed alpha
Helix 57	AG3	G	701	715	Right-handed alpha
Helix 58	AG4	G	718	737	Right-handed alpha
Helix 59	AG5	G	741	772	Right-handed alpha
Helix 60	AG6	G	823	851	Right-handed alpha
Helix 61	AG7	G	853	863	Right-handed alpha
Helix 62	AG8	G	865	868	Right-handed 310
Helix 63	AG9	G	869	878	Right-handed alpha
Helix 64	AH1	X	34	46	Right-handed alpha
Helix 65	AH2	X	56	63	Right-handed alpha
Helix 66	AH3	X	66	80	Right-handed alpha
Helix 67	AH4	u	63	91	Right-handed alpha
Helix 68	AH5	v	59	91	Right-handed alpha

There are 5 sheets in PDB entry 9G40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	277	279	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	624	628	first strand
Strand 2	F	641	645	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	236	first strand
Strand 2	G	245	248	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	411	first strand
Strand 2	G	432	434	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	573	577	first strand
Strand 2	G	616	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G40

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G40