Analysis of interatomic Contacts of Structural Units in PDB entry:
9G41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G41 entry

There are 2 chains in PDB entry 9G41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1015	GLU 2761
B	PHE 1015	GLU 2761

There are 29 helices in PDB entry 9G41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1065	1067	Right-handed 310
Helix 2	AA2	A	2401	2405	Right-handed 310
Helix 3	AA3	A	2432	2434	Right-handed 310
Helix 4	AA4	A	2435	2442	Right-handed alpha
Helix 5	AA5	A	2451	2455	Right-handed 310
Helix 6	AA6	A	2469	2477	Right-handed alpha
Helix 7	AA7	A	2480	2485	Right-handed alpha
Helix 8	AA8	A	2499	2507	Right-handed alpha
Helix 9	AA9	A	2515	2529	Right-handed alpha
Helix 10	AB1	A	2581	2592	Right-handed alpha
Helix 11	AB2	A	2618	2626	Right-handed alpha
Helix 12	AB3	A	2677	2707	Right-handed alpha
Helix 13	AB4	A	2717	2727	Right-handed alpha
Helix 14	AB5	A	2744	2749	Right-handed 310
Helix 15	AB6	A	2750	2752	Right-handed 310
Helix 16	AB7	B	1065	1067	Right-handed 310
Helix 17	AB8	B	2401	2405	Right-handed 310
Helix 18	AB9	B	2435	2442	Right-handed alpha
Helix 19	AC1	B	2451	2455	Right-handed 310
Helix 20	AC2	B	2469	2477	Right-handed alpha
Helix 21	AC3	B	2480	2485	Right-handed alpha
Helix 22	AC4	B	2499	2507	Right-handed alpha
Helix 23	AC5	B	2515	2529	Right-handed alpha
Helix 24	AC6	B	2581	2592	Right-handed alpha
Helix 25	AC7	B	2618	2626	Right-handed alpha
Helix 26	AC8	B	2677	2707	Right-handed alpha
Helix 27	AC9	B	2717	2727	Right-handed alpha
Helix 28	AD1	B	2744	2749	Right-handed 310
Helix 29	AD2	B	2750	2752	Right-handed 310

There are 23 sheets in PDB entry 9G41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1024	first strand
Strand 2	A	1072	1077	anti-parallel
Strand 3	A	1112	1117	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1040	1041	first strand
Strand 2	A	1046	1051	anti-parallel
Strand 3	A	1060	1063	anti-parallel
Strand 4	A	1171	1172	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1105	first strand
Strand 2	A	1087	1096	anti-parallel
Strand 3	A	1130	1141	anti-parallel
Strand 4	A	1148	1158	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1179	first strand
Strand 2	A	1184	1186	anti-parallel
Strand 3	A	1192	1194	anti-parallel

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There are 48 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1574	1578	first strand
Strand 2	A	1583	1587	anti-parallel
Strand 3	A	1593	1598	anti-parallel
Strand 4	A	1604	1610	anti-parallel
Strand 5	A	1616	1621	anti-parallel
Strand 6	A	1626	1631	anti-parallel
Strand 7	A	1637	1641	anti-parallel
Strand 8	A	1647	1652	anti-parallel
Strand 9	A	1658	1662	anti-parallel
Strand 10	A	1667	1673	anti-parallel
Strand 11	A	1680	1684	anti-parallel
Strand 12	A	1690	1695	anti-parallel
Strand 13	A	1701	1705	anti-parallel
Strand 14	A	1711	1718	anti-parallel
Strand 15	A	1722	1728	anti-parallel
Strand 16	A	1735	1741	anti-parallel
Strand 17	A	1745	1752	anti-parallel
Strand 18	A	1755	1762	anti-parallel
Strand 19	A	1766	1770	anti-parallel
Strand 20	A	1776	1783	anti-parallel
Strand 21	A	1792	1800	anti-parallel
Strand 22	A	1807	1819	anti-parallel
Strand 23	A	1822	1832	anti-parallel
Strand 24	A	1835	1843	anti-parallel
Strand 25	A	1848	1852	anti-parallel
Strand 26	A	1859	1864	anti-parallel
Strand 27	A	1870	1874	anti-parallel
Strand 28	A	1882	1886	anti-parallel
Strand 29	A	1892	1897	anti-parallel
Strand 30	A	1900	1906	anti-parallel
Strand 31	A	1912	1917	anti-parallel
Strand 32	A	1922	1927	anti-parallel
Strand 33	A	1931	1935	anti-parallel
Strand 34	A	1941	1946	anti-parallel
Strand 35	A	1952	1956	anti-parallel
Strand 36	A	1962	1969	anti-parallel
Strand 37	A	1974	1979	anti-parallel
Strand 38	A	1987	1991	anti-parallel
Strand 39	A	1997	2002	anti-parallel
Strand 40	A	2007	2013	anti-parallel
Strand 41	A	2019	2024	anti-parallel
Strand 42	A	2027	2033	anti-parallel
Strand 43	A	2040	2047	anti-parallel
Strand 44	A	2050	2059	anti-parallel
Strand 45	A	2062	2070	anti-parallel
Strand 46	A	2078	2084	anti-parallel
Strand 47	A	2091	2098	anti-parallel
Strand 48	A	2101	2102	anti-parallel

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There are 58 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1574	1578	first strand
Strand 2	A	1583	1587	anti-parallel
Strand 3	A	1593	1598	anti-parallel
Strand 4	A	1604	1610	anti-parallel
Strand 5	A	1616	1621	anti-parallel
Strand 6	A	1626	1631	anti-parallel
Strand 7	A	1637	1641	anti-parallel
Strand 8	A	1647	1652	anti-parallel
Strand 9	A	1658	1662	anti-parallel
Strand 10	A	1667	1673	anti-parallel
Strand 11	A	1680	1684	anti-parallel
Strand 12	A	1690	1695	anti-parallel
Strand 13	A	1701	1705	anti-parallel
Strand 14	A	1711	1718	anti-parallel
Strand 15	A	1722	1728	anti-parallel
Strand 16	A	1735	1741	anti-parallel
Strand 17	A	1745	1752	anti-parallel
Strand 18	A	1755	1762	anti-parallel
Strand 19	A	1766	1770	anti-parallel
Strand 20	A	1776	1783	anti-parallel
Strand 21	A	1792	1800	anti-parallel
Strand 22	A	1807	1819	anti-parallel
Strand 23	A	1822	1832	anti-parallel
Strand 24	A	1835	1843	anti-parallel
Strand 25	A	1848	1852	anti-parallel
Strand 26	A	1859	1864	anti-parallel
Strand 27	A	1870	1874	anti-parallel
Strand 28	A	1882	1886	anti-parallel
Strand 29	A	1892	1897	anti-parallel
Strand 30	A	1900	1906	anti-parallel
Strand 31	A	1912	1917	anti-parallel
Strand 32	A	1922	1927	anti-parallel
Strand 33	A	1931	1935	anti-parallel
Strand 34	A	1941	1946	anti-parallel
Strand 35	A	1952	1956	anti-parallel
Strand 36	A	1962	1969	anti-parallel
Strand 37	A	1974	1979	anti-parallel
Strand 38	A	1987	1991	anti-parallel
Strand 39	A	1997	2002	anti-parallel
Strand 40	A	2007	2013	anti-parallel
Strand 41	A	2019	2024	anti-parallel
Strand 42	A	2027	2033	anti-parallel
Strand 43	A	2040	2047	anti-parallel
Strand 44	A	2050	2059	anti-parallel
Strand 45	A	2062	2070	anti-parallel
Strand 46	A	2078	2084	anti-parallel
Strand 47	A	2091	2098	anti-parallel
Strand 48	A	2106	2110	anti-parallel
Strand 49	A	2117	2120	anti-parallel
Strand 50	A	2123	2128	anti-parallel
Strand 51	A	2131	2135	anti-parallel
Strand 52	A	2139	2145	anti-parallel
Strand 53	A	2151	2158	anti-parallel
Strand 54	A	2161	2170	anti-parallel
Strand 55	A	2176	2183	anti-parallel
Strand 56	A	2190	2196	anti-parallel
Strand 57	A	2202	2207	anti-parallel
Strand 58	A	2211	2214	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2216	2217	first strand
Strand 2	A	2223	2226	anti-parallel
Strand 3	A	2235	2239	anti-parallel
Strand 4	A	2245	2248	anti-parallel
Strand 5	A	2251	2255	anti-parallel
Strand 6	A	2261	2264	anti-parallel
Strand 7	A	2267	2271	anti-parallel
Strand 8	A	2277	2282	anti-parallel
Strand 9	A	2287	2293	anti-parallel
Strand 10	A	2299	2304	anti-parallel
Strand 11	A	2309	2313	anti-parallel
Strand 12	A	2325	2328	anti-parallel
Strand 13	A	2333	2339	anti-parallel
Strand 14	A	2345	2350	anti-parallel
Strand 15	A	2355	2360	anti-parallel
Strand 16	A	2366	2370	anti-parallel
Strand 17	A	2376	2382	anti-parallel
Strand 18	A	2388	2391	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2406	2408	first strand
Strand 2	A	2413	2416	anti-parallel
Strand 3	A	2419	2422	anti-parallel
Strand 4	A	2427	2428	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2563	2568	first strand
Strand 2	A	2571	2576	anti-parallel
Strand 3	A	2594	2596	anti-parallel
Strand 4	A	2607	2615	anti-parallel
Strand 5	A	2602	2604	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2563	2568	first strand
Strand 2	A	2571	2576	anti-parallel
Strand 3	A	2594	2596	anti-parallel
Strand 4	A	2607	2615	anti-parallel
Strand 5	A	2666	2673	parallel
Strand 6	A	2658	2662	anti-parallel
Strand 7	A	2639	2642	anti-parallel
Strand 8	A	2630	2633	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2733	2737	first strand
Strand 2	A	2754	2758	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1024	first strand
Strand 2	B	1072	1077	anti-parallel
Strand 3	B	1112	1117	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1040	1041	first strand
Strand 2	B	1046	1051	anti-parallel
Strand 3	B	1060	1063	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1099	1105	first strand
Strand 2	B	1087	1096	anti-parallel
Strand 3	B	1130	1141	anti-parallel
Strand 4	B	1148	1158	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1177	1179	first strand
Strand 2	B	1184	1186	anti-parallel
Strand 3	B	1192	1194	anti-parallel

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There are 29 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1574	1578	first strand
Strand 2	B	1583	1587	anti-parallel
Strand 3	B	1593	1598	anti-parallel
Strand 4	B	1604	1610	anti-parallel
Strand 5	B	1616	1621	anti-parallel
Strand 6	B	1626	1631	anti-parallel
Strand 7	B	1637	1641	anti-parallel
Strand 8	B	1647	1652	anti-parallel
Strand 9	B	1658	1662	anti-parallel
Strand 10	B	1667	1673	anti-parallel
Strand 11	B	1680	1684	anti-parallel
Strand 12	B	1690	1695	anti-parallel
Strand 13	B	1701	1705	anti-parallel
Strand 14	B	1711	1718	anti-parallel
Strand 15	B	1722	1728	anti-parallel
Strand 16	B	1735	1741	anti-parallel
Strand 17	B	1745	1752	anti-parallel
Strand 18	B	1755	1762	anti-parallel
Strand 19	B	1767	1770	anti-parallel
Strand 20	B	1776	1783	anti-parallel
Strand 21	B	1792	1800	anti-parallel
Strand 22	B	1807	1819	anti-parallel
Strand 23	B	1822	1832	anti-parallel
Strand 24	B	1835	1843	anti-parallel
Strand 25	B	1848	1852	anti-parallel
Strand 26	B	1859	1864	anti-parallel
Strand 27	B	1870	1874	anti-parallel
Strand 28	B	1882	1886	anti-parallel
Strand 29	B	1892	1897	anti-parallel

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There are 19 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1902	1906	first strand
Strand 2	B	1912	1917	anti-parallel
Strand 3	B	1922	1927	anti-parallel
Strand 4	B	1931	1935	anti-parallel
Strand 5	B	1941	1946	anti-parallel
Strand 6	B	1952	1956	anti-parallel
Strand 7	B	1962	1969	anti-parallel
Strand 8	B	1974	1979	anti-parallel
Strand 9	B	1987	1991	anti-parallel
Strand 10	B	1997	2002	anti-parallel
Strand 11	B	2007	2013	anti-parallel
Strand 12	B	2019	2024	anti-parallel
Strand 13	B	2027	2033	anti-parallel
Strand 14	B	2040	2047	anti-parallel
Strand 15	B	2050	2059	anti-parallel
Strand 16	B	2062	2070	anti-parallel
Strand 17	B	2078	2084	anti-parallel
Strand 18	B	2091	2098	anti-parallel
Strand 19	B	2101	2102	anti-parallel

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There are 29 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1902	1906	first strand
Strand 2	B	1912	1917	anti-parallel
Strand 3	B	1922	1927	anti-parallel
Strand 4	B	1931	1935	anti-parallel
Strand 5	B	1941	1946	anti-parallel
Strand 6	B	1952	1956	anti-parallel
Strand 7	B	1962	1969	anti-parallel
Strand 8	B	1974	1979	anti-parallel
Strand 9	B	1987	1991	anti-parallel
Strand 10	B	1997	2002	anti-parallel
Strand 11	B	2007	2013	anti-parallel
Strand 12	B	2019	2024	anti-parallel
Strand 13	B	2027	2033	anti-parallel
Strand 14	B	2040	2047	anti-parallel
Strand 15	B	2050	2059	anti-parallel
Strand 16	B	2062	2070	anti-parallel
Strand 17	B	2078	2084	anti-parallel
Strand 18	B	2091	2098	anti-parallel
Strand 19	B	2106	2110	anti-parallel
Strand 20	B	2117	2120	anti-parallel
Strand 21	B	2123	2128	anti-parallel
Strand 22	B	2131	2135	anti-parallel
Strand 23	B	2139	2145	anti-parallel
Strand 24	B	2151	2158	anti-parallel
Strand 25	B	2161	2170	anti-parallel
Strand 26	B	2176	2183	anti-parallel
Strand 27	B	2190	2196	anti-parallel
Strand 28	B	2202	2207	anti-parallel
Strand 29	B	2211	2214	anti-parallel

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There are 18 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2216	2217	first strand
Strand 2	B	2223	2226	anti-parallel
Strand 3	B	2235	2239	anti-parallel
Strand 4	B	2245	2248	anti-parallel
Strand 5	B	2251	2255	anti-parallel
Strand 6	B	2261	2264	anti-parallel
Strand 7	B	2267	2271	anti-parallel
Strand 8	B	2277	2282	anti-parallel
Strand 9	B	2287	2293	anti-parallel
Strand 10	B	2299	2304	anti-parallel
Strand 11	B	2309	2313	anti-parallel
Strand 12	B	2325	2328	anti-parallel
Strand 13	B	2333	2339	anti-parallel
Strand 14	B	2345	2350	anti-parallel
Strand 15	B	2355	2360	anti-parallel
Strand 16	B	2366	2370	anti-parallel
Strand 17	B	2376	2382	anti-parallel
Strand 18	B	2388	2391	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2406	2408	first strand
Strand 2	B	2413	2415	anti-parallel
Strand 3	B	2420	2422	anti-parallel
Strand 4	B	2427	2428	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2563	2568	first strand
Strand 2	B	2571	2576	anti-parallel
Strand 3	B	2594	2596	anti-parallel
Strand 4	B	2607	2615	anti-parallel
Strand 5	B	2602	2604	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2563	2568	first strand
Strand 2	B	2571	2576	anti-parallel
Strand 3	B	2594	2596	anti-parallel
Strand 4	B	2607	2615	anti-parallel
Strand 5	B	2666	2673	parallel
Strand 6	B	2658	2663	anti-parallel
Strand 7	B	2639	2642	anti-parallel
Strand 8	B	2630	2633	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2733	2737	first strand
Strand 2	B	2754	2758	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G41

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G41