Analysis of interatomic Contacts of Structural Units in PDB entry:
9G59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G59 entry

There are 2 chains in PDB entry 9G59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 69CYS 218
B
 ALA 68CYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 9G59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
194 202Right-handed alpha
Helix 2
AA2
B
194 202Right-handed alpha
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There are 5 sheets in PDB entry 9G59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
203 205parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
114 121anti-parallel
Strand 3
A
99 111anti-parallel
Strand 4
A
191 193anti-parallel
Strand 5
A
87 92parallel
Strand 6
A
76 80anti-parallel
Strand 7
A
163 170anti-parallel
Strand 8
A
173 182anti-parallel
Strand 9
A
99 111parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
203 205parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
114 121anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
173 182parallel
Strand 5
B
162 170anti-parallel
Strand 6
B
137 138anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
114 121anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
191 193anti-parallel
Strand 5
B
86 92parallel
Strand 6
B
76 81anti-parallel
Strand 7
B
162 170anti-parallel
Strand 8
B
137 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il