Analysis of interatomic Contacts of Structural Units in PDB entry:
9G5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G5K entry

There are 2 chains in PDB entry 9G5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1HIS 127
A
 SER 11TYR 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9G5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
74 76Right-handed 310
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
B
109 113Right-handed 310
Helix 4
AA4
A
12 28Right-handed alpha
Helix 5
AA5
A
31 33Right-handed 310
Helix 6
AA6
A
34 40Right-handed alpha
Helix 7
AA7
A
47 54Right-handed alpha
Helix 8
AA8
A
56 77Right-handed alpha
Helix 9
AA9
A
79 100Right-handed alpha
Helix 10
AB1
A
102 119Right-handed alpha
Helix 11
AB2
A
119 131Right-handed alpha
Helix 12
AB3
A
132 134Right-handed 310
Helix 13
AB4
A
135 164Right-handed alpha
Helix 14
AB5
A
168 188Right-handed alpha
Helix 15
AB6
A
271 274Right-handed 310
Helix 16
AB7
A
275 307Right-handed alpha
Helix 17
AB8
A
315 337Right-handed alpha
Helix 18
AB9
A
340 366Right-handed alpha
Helix 19
AC1
A
368 395Right-handed alpha
Helix 20
AC2
A
399 425Right-handed alpha
Helix 21
AC3
A
434 455Right-handed alpha
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There are 3 sheets in PDB entry 9G5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
120 125parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 52anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
120 125parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
115 116anti-parallel
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