Analysis of interatomic Contacts of Structural Units in PDB entry:
9G79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G79 entry

There are 2 chains in PDB entry 9G79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 5GLN 453
A
 ALA 5GLN 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9G79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
17 25Right-handed alpha
Helix 2
AA2
B
26 31Right-handed alpha
Helix 3
AA3
B
32 34Right-handed 310
Helix 4
AA4
B
35 40Right-handed alpha
Helix 5
AA5
B
43 49Right-handed alpha
Helix 6
AA6
B
49 54Right-handed alpha
Helix 7
AA7
B
76 94Right-handed alpha
Helix 8
AA8
B
109 122Right-handed alpha
Helix 9
AA9
B
134 146Right-handed alpha
Helix 10
AB1
B
156 160Right-handed 310
Helix 11
AB2
B
161 165Right-handed 310
Helix 12
AB3
B
187 193Right-handed alpha
Helix 13
AB4
B
229 241Right-handed alpha
Helix 14
AB5
B
258 264Right-handed alpha
Helix 15
AB6
B
266 272Right-handed alpha
Helix 16
AB7
B
284 296Right-handed alpha
Helix 17
AB8
B
303 313Right-handed alpha
Helix 18
AB9
B
314 320Right-handed alpha
Helix 19
AC1
B
337 348Right-handed alpha
Helix 20
AC2
B
422 428Right-handed alpha
Helix 21
AC3
A
17 25Right-handed alpha
Helix 22
AC4
A
26 31Right-handed alpha
Helix 23
AC5
A
32 34Right-handed 310
Helix 24
AC6
A
35 40Right-handed alpha
Helix 25
AC7
A
43 49Right-handed alpha
Helix 26
AC8
A
49 54Right-handed alpha
Helix 27
AC9
A
76 94Right-handed alpha
Helix 28
AD1
A
109 122Right-handed alpha
Helix 29
AD2
A
134 145Right-handed alpha
Helix 30
AD3
A
156 160Right-handed 310
Helix 31
AD4
A
161 165Right-handed 310
Helix 32
AD5
A
187 193Right-handed alpha
Helix 33
AD6
A
229 241Right-handed alpha
Helix 34
AD7
A
259 264Right-handed alpha
Helix 35
AD8
A
266 272Right-handed alpha
Helix 36
AD9
A
284 296Right-handed alpha
Helix 37
AE1
A
303 314Right-handed alpha
Helix 38
AE2
A
314 321Right-handed alpha
Helix 39
AE3
A
337 348Right-handed alpha
Helix 40
AE4
A
422 428Right-handed alpha
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There are 10 sheets in PDB entry 9G79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
61 66anti-parallel
Strand 3
B
275 279parallel
Strand 4
B
249 252parallel
Strand 5
B
299 302parallel
Strand 6
B
328 331parallel
Strand 7
B
352 356parallel
Strand 8
B
366 367anti-parallel
Strand 9
B
381 382anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
101 105parallel
Strand 3
B
149 152parallel
Strand 4
B
170 173parallel
Strand 5
B
184 186parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 214first strand
Strand 2
B
222 227anti-parallel
Strand 3
B
418 419anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 391first strand
Strand 2
B
404 409anti-parallel
Strand 3
B
435 444anti-parallel
Strand 4
B
430 431anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 391first strand
Strand 2
B
404 409anti-parallel
Strand 3
B
435 444anti-parallel
Strand 4
B
450 452anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
275 279parallel
Strand 4
A
249 252parallel
Strand 5
A
299 302parallel
Strand 6
A
328 331parallel
Strand 7
A
352 356parallel
Strand 8
A
366 367anti-parallel
Strand 9
A
381 382anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
101 105parallel
Strand 3
A
149 152parallel
Strand 4
A
170 173parallel
Strand 5
A
184 186parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 214first strand
Strand 2
A
222 227anti-parallel
Strand 3
A
418 419anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
404 409anti-parallel
Strand 3
A
435 444anti-parallel
Strand 4
A
430 431anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
404 409anti-parallel
Strand 3
A
435 444anti-parallel
Strand 4
A
450 452anti-parallel
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