Analysis of interatomic Contacts of Structural Units in PDB entry:
9G7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G7F entry

There are 3 chains in PDB entry 9G7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 3	GLU 559
A	ALA 5	PHE 452
C	HIS 4	TYR 210

There are 51 helices in PDB entry 9G7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	24	Right-handed alpha
Helix 2	AA2	B	26	33	Right-handed alpha
Helix 3	AA3	B	35	40	Right-handed alpha
Helix 4	AA4	B	43	55	Right-handed alpha
Helix 5	AA5	B	56	59	Right-handed 310
Helix 6	AA6	B	76	95	Right-handed alpha
Helix 7	AA7	B	109	122	Right-handed alpha
Helix 8	AA8	B	134	146	Right-handed alpha
Helix 9	AA9	B	153	160	Right-handed 310
Helix 10	AB1	B	187	194	Right-handed alpha
Helix 11	AB2	B	229	241	Right-handed alpha
Helix 12	AB3	B	259	264	Right-handed alpha
Helix 13	AB4	B	266	272	Right-handed alpha
Helix 14	AB5	B	284	296	Right-handed alpha
Helix 15	AB6	B	303	314	Right-handed alpha
Helix 16	AB7	B	314	320	Right-handed alpha
Helix 17	AB8	B	337	349	Right-handed alpha
Helix 18	AB9	B	422	429	Right-handed alpha
Helix 19	AC1	B	468	478	Right-handed alpha
Helix 20	AC2	B	512	527	Right-handed alpha
Helix 21	AC3	B	552	559	Right-handed alpha
Helix 22	AC4	A	17	24	Right-handed alpha
Helix 23	AC5	A	26	32	Right-handed alpha
Helix 24	AC6	A	43	49	Right-handed alpha
Helix 25	AC7	A	49	54	Right-handed alpha
Helix 26	AC8	A	76	95	Right-handed alpha
Helix 27	AC9	A	109	122	Right-handed alpha
Helix 28	AD1	A	134	146	Right-handed alpha
Helix 29	AD2	A	153	158	Right-handed alpha
Helix 30	AD3	A	159	160	Right-handed 310
Helix 31	AD4	A	161	165	Right-handed 310
Helix 32	AD5	A	187	192	Right-handed alpha
Helix 33	AD6	A	230	241	Right-handed alpha
Helix 34	AD7	A	258	264	Right-handed alpha
Helix 35	AD8	A	266	272	Right-handed alpha
Helix 36	AD9	A	284	296	Right-handed alpha
Helix 37	AE1	A	303	312	Right-handed alpha
Helix 38	AE2	A	314	320	Right-handed alpha
Helix 39	AE3	A	337	349	Right-handed alpha
Helix 40	AE4	A	422	429	Right-handed alpha
Helix 41	AE5	C	26	32	Right-handed alpha
Helix 42	AE6	C	44	58	Right-handed alpha
Helix 43	AE7	C	85	89	Right-handed 310
Helix 44	AE8	C	111	122	Right-handed alpha
Helix 45	AE9	C	123	127	Right-handed 310
Helix 46	AF1	C	136	140	Right-handed 310
Helix 47	AF2	C	148	161	Right-handed alpha
Helix 48	AF3	C	162	164	Right-handed 310
Helix 49	AF4	C	174	178	Right-handed 310
Helix 50	AF5	C	192	204	Right-handed alpha
Helix 51	AF6	C	206	210	Right-handed 310

There are 14 sheets in PDB entry 9G7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	275	279	parallel
Strand 4	B	249	252	parallel
Strand 5	B	299	302	parallel
Strand 6	B	328	331	parallel
Strand 7	B	352	356	parallel
Strand 8	B	366	367	anti-parallel
Strand 9	B	381	382	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	101	105	parallel
Strand 3	B	149	152	parallel
Strand 4	B	170	173	parallel
Strand 5	B	184	186	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	214	first strand
Strand 2	B	222	227	anti-parallel
Strand 3	B	416	419	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	435	441	anti-parallel
Strand 4	B	430	431	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	492	first strand
Strand 2	B	496	505	anti-parallel
Strand 3	B	535	538	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	275	279	parallel
Strand 4	A	249	252	parallel
Strand 5	A	299	302	parallel
Strand 6	A	328	332	parallel
Strand 7	A	352	355	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	101	105	parallel
Strand 3	A	149	152	parallel
Strand 4	A	170	173	parallel
Strand 5	A	184	186	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	222	227	anti-parallel
Strand 3	A	416	419	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	381	382	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	435	444	anti-parallel
Strand 4	A	430	431	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	435	444	anti-parallel
Strand 4	A	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	63	68	anti-parallel
Strand 4	C	71	77	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	130	135	parallel
Strand 3	C	182	186	anti-parallel
Strand 4	C	166	168	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G7F