Analysis of interatomic Contacts of Structural Units in PDB entry:
9G87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G87 entry

There are 2 chains in PDB entry 9G87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7ALA 443
B
 ALA 2PHE 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9G87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
16 39Right-handed alpha
Helix 3
AA3
A
52 59Right-handed alpha
Helix 4
AA4
A
65 76Right-handed alpha
Helix 5
AA5
A
78 90Right-handed alpha
Helix 6
AA6
A
96 108Right-handed alpha
Helix 7
AA7
A
129 144Right-handed alpha
Helix 8
AA8
A
166 192Right-handed alpha
Helix 9
AA9
A
196 221Right-handed alpha
Helix 10
AB1
A
232 244Right-handed alpha
Helix 11
AB2
A
247 268Right-handed alpha
Helix 12
AB3
A
295 297Right-handed 310
Helix 13
AB4
A
298 308Right-handed alpha
Helix 14
AB5
A
317 322Right-handed alpha
Helix 15
AB6
A
323 324Right-handed 310
Helix 16
AB7
A
325 329Right-handed 310
Helix 17
AB8
A
336 371Right-handed alpha
Helix 18
AB9
A
383 388Right-handed alpha
Helix 19
AC1
A
389 400Right-handed alpha
Helix 20
AC2
A
414 418Right-handed 310
Helix 21
AC3
A
419 443Right-handed alpha
Helix 22
AC4
B
13 27Right-handed alpha
Helix 23
AC5
B
30 39Right-handed alpha
Helix 24
AC6
B
52 59Right-handed alpha
Helix 25
AC7
B
76 80Right-handed 310
Helix 26
AC8
B
85 97Right-handed alpha
Helix 27
AC9
B
111 123Right-handed alpha
Helix 28
AD1
B
142 163Right-handed alpha
Helix 29
AD2
B
167 195Right-handed alpha
Helix 30
AD3
B
196 199Right-handed 310
Helix 31
AD4
B
200 209Right-handed alpha
Helix 32
AD5
B
210 213Right-handed 310
Helix 33
AD6
B
215 233Right-handed alpha
Helix 34
AD7
B
254 263Right-handed alpha
Helix 35
AD8
B
273 278Right-handed 310
Helix 36
AD9
B
288 300Right-handed alpha
Helix 37
AE1
B
313 325Right-handed alpha
Helix 38
AE2
B
338 356Right-handed alpha
Helix 39
AE3
B
371 387Right-handed alpha
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There are 6 sheets in PDB entry 9G87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
43 45parallel
Strand 3
A
120 126parallel
Strand 4
A
147 150parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
278 281anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 316first strand
Strand 2
A
286 292parallel
Strand 3
A
374 378parallel
Strand 4
A
405 407parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
43 47parallel
Strand 3
B
104 107parallel
Strand 4
B
129 131parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
241 246parallel
Strand 3
B
329 335parallel
Strand 4
B
359 364parallel
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