Analysis of interatomic Contacts of Structural Units in PDB entry:
9G88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G88 entry

There are 2 chains in PDB entry 9G88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 24	ALA 548
B	TYR 24	ALA 548

There are 24 helices in PDB entry 9G88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed 310
Helix 2	AA2	A	85	89	Right-handed 310
Helix 3	AA3	A	119	129	Right-handed alpha
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	A	143	147	Right-handed 310
Helix 6	AA6	A	270	276	Right-handed alpha
Helix 7	AA7	A	300	304	Right-handed 310
Helix 8	AA8	A	347	358	Right-handed alpha
Helix 9	AA9	A	397	400	Right-handed 310
Helix 10	AB1	A	490	492	Right-handed 310
Helix 11	AB2	A	517	519	Right-handed 310
Helix 12	AB3	A	538	542	Right-handed 310
Helix 13	AB4	B	26	31	Right-handed 310
Helix 14	AB5	B	85	89	Right-handed 310
Helix 15	AB6	B	119	129	Right-handed alpha
Helix 16	AB7	B	138	142	Right-handed 310
Helix 17	AB8	B	143	147	Right-handed 310
Helix 18	AB9	B	270	276	Right-handed alpha
Helix 19	AC1	B	300	304	Right-handed 310
Helix 20	AC2	B	347	358	Right-handed alpha
Helix 21	AC3	B	397	400	Right-handed 310
Helix 22	AC4	B	490	492	Right-handed 310
Helix 23	AC5	B	517	519	Right-handed 310
Helix 24	AC6	B	538	542	Right-handed 310

There are 17 sheets in PDB entry 9G88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	98	106	anti-parallel
Strand 4	A	109	116	anti-parallel
Strand 5	A	51	54	anti-parallel
Strand 6	B	51	54	anti-parallel
Strand 7	B	109	116	anti-parallel
Strand 8	B	98	106	anti-parallel
Strand 9	B	69	76	anti-parallel
Strand 10	B	511	515	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	495	500	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	468	476	anti-parallel
Strand 5	A	449	451	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	495	500	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	468	476	anti-parallel
Strand 5	A	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	175	177	anti-parallel
Strand 4	A	184	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	224	230	anti-parallel
Strand 4	A	236	243	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	255	first strand
Strand 2	A	259	269	anti-parallel
Strand 3	A	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	255	first strand
Strand 2	A	259	269	anti-parallel
Strand 3	A	290	295	anti-parallel
Strand 4	A	305	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	362	369	anti-parallel
Strand 4	A	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	395	first strand
Strand 2	A	406	411	anti-parallel
Strand 3	A	429	434	anti-parallel
Strand 4	A	439	444	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	495	500	anti-parallel
Strand 3	B	481	488	anti-parallel
Strand 4	B	468	476	anti-parallel
Strand 5	B	449	451	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	495	500	anti-parallel
Strand 3	B	481	488	anti-parallel
Strand 4	B	468	476	anti-parallel
Strand 5	B	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	175	177	anti-parallel
Strand 4	B	184	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	210	215	anti-parallel
Strand 3	B	224	230	anti-parallel
Strand 4	B	236	243	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	255	first strand
Strand 2	B	259	269	anti-parallel
Strand 3	B	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	255	first strand
Strand 2	B	259	269	anti-parallel
Strand 3	B	290	295	anti-parallel
Strand 4	B	305	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	322	first strand
Strand 2	B	328	335	anti-parallel
Strand 3	B	362	369	anti-parallel
Strand 4	B	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	395	first strand
Strand 2	B	406	411	anti-parallel
Strand 3	B	429	434	anti-parallel
Strand 4	B	439	444	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G88

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G88