Analysis of interatomic Contacts of Structural Units in PDB entry:
9G8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G8H entry

There are 2 chains in PDB entry 9G8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144SER 760
Q
 SER 16ALA 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9G8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 172Right-handed 310
Helix 2
AA2
A
448 453Right-handed 310
Helix 3
AA3
A
459 464Right-handed alpha
Helix 4
AA4
A
473 475Right-handed 310
Helix 5
AA5
A
652 656Right-handed 310
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There are 14 sheets in PDB entry 9G8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
194 212anti-parallel
Strand 3
A
251 267anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
237 243anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
194 212anti-parallel
Strand 3
A
282 288anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
279 280anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
646 651anti-parallel
Strand 3
A
300 301anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
646 651anti-parallel
Strand 3
A
629 633anti-parallel
Strand 4
A
619 623anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
335 341anti-parallel
Strand 3
A
316 320anti-parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
699 701anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 366first strand
Strand 2
A
372 375anti-parallel
Strand 3
A
383 387anti-parallel
Strand 4
A
392 395anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
416 419anti-parallel
Strand 3
A
432 436anti-parallel
Strand 4
A
440 444anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 471first strand
Strand 2
A
477 479anti-parallel
Strand 3
A
485 490anti-parallel
Strand 4
A
496 502anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 518first strand
Strand 2
A
521 525anti-parallel
Strand 3
A
540 544anti-parallel
Strand 4
A
550 553anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
A
582 583anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 568first strand
Strand 2
A
574 580anti-parallel
Strand 3
A
596 598anti-parallel
Strand 4
A
605 607anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 670first strand
Strand 2
A
680 685anti-parallel
Strand 3
A
723 727anti-parallel
Strand 4
A
716 717anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 676first strand
Strand 2
A
755 760parallel
Strand 3
A
738 745anti-parallel
Strand 4
A
691 696anti-parallel
Strand 5
A
710 714anti-parallel
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