Analysis of interatomic Contacts of Structural Units in PDB entry:
9G8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G8R entry

There are 5 chains in PDB entry 9G8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 452	GLN 1564
C	MET 1	ILE 305
D	MET 1	ILE 305
E	ASN 451	VAL 464
A	MET 1	ALA 197

There are 64 helices in PDB entry 9G8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	453	468	Right-handed alpha
Helix 2	AA2	B	468	474	Right-handed alpha
Helix 3	AA3	B	477	489	Right-handed alpha
Helix 4	AA4	B	492	506	Right-handed alpha
Helix 5	AA5	B	509	524	Right-handed alpha
Helix 6	AA6	B	527	541	Right-handed alpha
Helix 7	AA7	B	543	558	Right-handed alpha
Helix 8	AA8	B	563	577	Right-handed alpha
Helix 9	AA9	B	579	592	Right-handed alpha
Helix 10	AB1	B	597	612	Right-handed alpha
Helix 11	AB2	B	615	628	Right-handed alpha
Helix 12	AB3	B	632	645	Right-handed alpha
Helix 13	AB4	B	647	662	Right-handed alpha
Helix 14	AB5	B	665	686	Right-handed alpha
Helix 15	AB6	B	688	710	Right-handed alpha
Helix 16	AB7	B	713	727	Right-handed alpha
Helix 17	AB8	B	742	744	Right-handed 310
Helix 18	AB9	B	754	773	Right-handed alpha
Helix 19	AC1	B	775	796	Right-handed alpha
Helix 20	AC2	B	803	821	Right-handed alpha
Helix 21	AC3	B	824	836	Right-handed alpha
Helix 22	AC4	B	842	857	Right-handed alpha
Helix 23	AC5	B	860	874	Right-handed alpha
Helix 24	AC6	B	876	891	Right-handed alpha
Helix 25	AC7	B	894	909	Right-handed alpha
Helix 26	AC8	B	912	925	Right-handed alpha
Helix 27	AC9	B	926	943	Right-handed alpha
Helix 28	AD1	B	950	958	Right-handed alpha
Helix 29	AD2	B	960	976	Right-handed alpha
Helix 30	AD3	B	979	993	Right-handed alpha
Helix 31	AD4	B	995	1011	Right-handed alpha
Helix 32	AD5	B	1017	1033	Right-handed alpha
Helix 33	AD6	B	1035	1045	Right-handed alpha
Helix 34	AD7	B	1050	1065	Right-handed alpha
Helix 35	AD8	B	1066	1081	Right-handed alpha
Helix 36	AD9	B	1083	1101	Right-handed alpha
Helix 37	AE1	B	1103	1117	Right-handed alpha
Helix 38	AE2	B	1121	1135	Right-handed alpha
Helix 39	AE3	B	1139	1152	Right-handed alpha
Helix 40	AE4	B	1157	1172	Right-handed alpha
Helix 41	AE5	B	1176	1189	Right-handed alpha
Helix 42	AE6	B	1192	1206	Right-handed alpha
Helix 43	AE7	B	1210	1225	Right-handed alpha
Helix 44	AE8	B	1228	1244	Right-handed alpha
Helix 45	AE9	B	1254	1266	Right-handed alpha
Helix 46	AF1	B	1269	1291	Right-handed alpha
Helix 47	AF2	B	1299	1312	Right-handed alpha
Helix 48	AF3	B	1317	1340	Right-handed alpha
Helix 49	AF4	B	1341	1356	Right-handed alpha
Helix 50	AF5	B	1359	1371	Right-handed alpha
Helix 51	AF6	B	1382	1396	Right-handed alpha
Helix 52	AF7	B	1399	1414	Right-handed alpha
Helix 53	AF8	B	1415	1433	Right-handed alpha
Helix 54	AF9	B	1436	1456	Right-handed alpha
Helix 55	AG1	B	1462	1478	Right-handed alpha
Helix 56	AG2	B	1480	1495	Right-handed alpha
Helix 57	AG3	B	1498	1511	Right-handed alpha
Helix 58	AG4	B	1515	1534	Right-handed alpha
Helix 59	AG5	B	1535	1549	Right-handed alpha
Helix 60	AG6	B	1552	1563	Right-handed alpha
Helix 61	AG7	E	453	464	Right-handed alpha
Helix 62	AG8	A	53	62	Right-handed alpha
Helix 63	AG9	A	65	73	Right-handed 310
Helix 64	AH1	A	86	91	Right-handed 310

There are 16 sheets in PDB entry 9G8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	740	first strand
Strand 2	B	750	753	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	288	293	anti-parallel
Strand 4	C	277	282	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	34	38	anti-parallel
Strand 3	C	46	49	anti-parallel
Strand 4	C	54	58	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	79	83	anti-parallel
Strand 3	C	87	91	anti-parallel
Strand 4	C	102	103	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	138	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	172	175	anti-parallel
Strand 4	C	182	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	204	208	anti-parallel
Strand 3	C	214	218	anti-parallel
Strand 4	C	224	228	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	256	260	anti-parallel
Strand 4	C	265	270	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	288	293	anti-parallel
Strand 4	D	277	282	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	D	46	49	anti-parallel
Strand 4	D	54	58	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	79	83	anti-parallel
Strand 3	D	87	91	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	130	134	anti-parallel
Strand 4	D	138	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	156	first strand
Strand 2	D	163	167	anti-parallel
Strand 3	D	172	175	anti-parallel
Strand 4	D	182	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	214	218	anti-parallel
Strand 4	D	224	228	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	247	251	anti-parallel
Strand 3	D	256	260	anti-parallel
Strand 4	D	265	270	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	30	33	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G8R