Analysis of interatomic Contacts of Structural Units in PDB entry:
9G8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G8T entry

There is 1 chain in PDB entry 9G8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2PHE 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9G8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
79 88Right-handed alpha
Helix 3
AA3
A
96 109Right-handed alpha
Helix 4
AA4
A
181 194Right-handed alpha
Helix 5
AA5
A
221 228Right-handed alpha
Helix 6
AA6
A
236 250Right-handed alpha
Helix 7
AA7
A
256 265Right-handed alpha
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There are 3 sheets in PDB entry 9G8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
28 32anti-parallel
Strand 4
A
63 68parallel
Strand 5
A
90 94parallel
Strand 6
A
123 125parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
77 78anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
158 162anti-parallel
Strand 5
A
200 203parallel
Strand 6
A
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il