Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G9A entry

There are 9 chains in PDB entry 9G9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	GLU 752
B	ASN 15	ARG 137
D	MET 1	LYS 214
E	MET 1	LYS 214
F	TYR 2	LEU 211
G	LEU 4	ILE 307
C	ASN 15	ARG 137
H	MET 1	ASP 216
R	A -7	A 17

There are 75 helices in PDB entry 9G9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	14	23	Right-handed alpha
Helix 3	AA3	A	31	42	Right-handed alpha
Helix 4	AA4	A	48	57	Right-handed alpha
Helix 5	AA5	A	59	65	Right-handed alpha
Helix 6	AA6	A	73	86	Right-handed alpha
Helix 7	AA7	A	114	117	Right-handed 310
Helix 8	AA8	A	119	124	Right-handed alpha
Helix 9	AA9	A	149	166	Right-handed alpha
Helix 10	AB1	A	174	187	Right-handed alpha
Helix 11	AB2	A	202	224	Right-handed alpha
Helix 12	AB3	A	228	234	Right-handed alpha
Helix 13	AB4	A	238	246	Right-handed alpha
Helix 14	AB5	A	258	265	Right-handed alpha
Helix 15	AB6	A	270	297	Right-handed alpha
Helix 16	AB7	A	300	302	Right-handed 310
Helix 17	AB8	A	319	342	Right-handed alpha
Helix 18	AB9	A	356	361	Right-handed alpha
Helix 19	AC1	A	365	383	Right-handed alpha
Helix 20	AC2	A	386	394	Right-handed alpha
Helix 21	AC3	A	425	430	Right-handed alpha
Helix 22	AC4	A	459	470	Right-handed alpha
Helix 23	AC5	A	497	502	Right-handed alpha
Helix 24	AC6	A	508	515	Right-handed 310
Helix 25	AC7	A	532	540	Right-handed alpha
Helix 26	AC8	A	547	564	Right-handed alpha
Helix 27	AC9	A	564	570	Right-handed alpha
Helix 28	AD1	A	591	610	Right-handed alpha
Helix 29	AD2	A	627	644	Right-handed alpha
Helix 30	AD3	A	661	667	Right-handed alpha
Helix 31	AD4	A	672	681	Right-handed alpha
Helix 32	AD5	A	687	699	Right-handed alpha
Helix 33	AD6	A	702	715	Right-handed alpha
Helix 34	AD7	A	719	732	Right-handed alpha
Helix 35	AD8	A	735	751	Right-handed alpha
Helix 36	AD9	B	16	24	Right-handed alpha
Helix 37	AE1	B	47	64	Right-handed alpha
Helix 38	AE2	B	70	91	Right-handed alpha
Helix 39	AE3	B	91	102	Right-handed alpha
Helix 40	AE4	B	102	114	Right-handed alpha
Helix 41	AE5	B	115	136	Right-handed alpha
Helix 42	AE6	D	47	64	Right-handed alpha
Helix 43	AE7	D	76	84	Right-handed alpha
Helix 44	AE8	D	104	113	Right-handed alpha
Helix 45	AE9	D	114	116	Right-handed 310
Helix 46	AF1	D	161	179	Right-handed alpha
Helix 47	AF2	E	47	64	Right-handed alpha
Helix 48	AF3	E	71	75	Right-handed 310
Helix 49	AF4	E	76	84	Right-handed alpha
Helix 50	AF5	E	104	113	Right-handed alpha
Helix 51	AF6	E	161	179	Right-handed alpha
Helix 52	AF7	E	184	188	Right-handed 310
Helix 53	AF8	F	47	63	Right-handed alpha
Helix 54	AF9	F	71	75	Right-handed 310
Helix 55	AG1	F	76	84	Right-handed alpha
Helix 56	AG2	F	104	114	Right-handed alpha
Helix 57	AG3	F	161	179	Right-handed alpha
Helix 58	AG4	G	32	47	Right-handed alpha
Helix 59	AG5	G	51	57	Right-handed alpha
Helix 60	AG6	G	87	96	Right-handed alpha
Helix 61	AG7	G	103	109	Right-handed alpha
Helix 62	AG8	G	113	123	Right-handed alpha
Helix 63	AG9	G	169	187	Right-handed alpha
Helix 64	AH1	G	191	195	Right-handed 310
Helix 65	AH2	G	206	215	Right-handed alpha
Helix 66	AH3	G	232	237	Right-handed alpha
Helix 67	AH4	C	16	25	Right-handed alpha
Helix 68	AH5	C	43	64	Right-handed alpha
Helix 69	AH6	C	71	91	Right-handed alpha
Helix 70	AH7	C	91	102	Right-handed alpha
Helix 71	AH8	C	102	114	Right-handed alpha
Helix 72	AH9	C	115	137	Right-handed alpha
Helix 73	AI1	H	140	153	Right-handed alpha
Helix 74	AI2	H	159	165	Right-handed alpha
Helix 75	AI3	H	174	176	Right-handed 310

There are 25 sheets in PDB entry 9G9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	129	130	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	311	317	anti-parallel
Strand 3	A	247	257	anti-parallel
Strand 4	A	346	355	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	453	458	anti-parallel
Strand 3	A	438	442	anti-parallel
Strand 4	A	474	478	anti-parallel
Strand 5	A	489	491	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	579	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	523	530	anti-parallel
Strand 4	A	615	622	anti-parallel
Strand 5	A	649	651	parallel
Strand 6	A	658	660	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	37	38	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	3	13	anti-parallel
Strand 5	D	192	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	90	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	127	first strand
Strand 2	D	134	142	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	43	46	anti-parallel
Strand 3	E	101	103	anti-parallel
Strand 4	E	147	156	anti-parallel
Strand 5	E	96	98	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	43	46	anti-parallel
Strand 3	E	101	103	anti-parallel
Strand 4	E	147	156	anti-parallel
Strand 5	E	3	13	anti-parallel
Strand 6	E	192	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	127	first strand
Strand 2	E	134	142	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	43	46	anti-parallel
Strand 3	F	101	103	anti-parallel
Strand 4	F	147	149	anti-parallel
Strand 5	F	3	13	anti-parallel
Strand 6	F	151	156	anti-parallel
Strand 7	F	96	98	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	43	46	anti-parallel
Strand 3	F	101	103	anti-parallel
Strand 4	F	147	149	anti-parallel
Strand 5	F	3	13	anti-parallel
Strand 6	F	192	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	137	142	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	5	13	anti-parallel
Strand 4	G	199	205	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	98	100	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	134	first strand
Strand 2	G	149	156	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	275	first strand
Strand 2	G	219	222	anti-parallel
Strand 3	G	302	305	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	266	269	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	285	first strand
Strand 2	G	295	297	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	11	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	166	167	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	127	129	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	182	first strand
Strand 2	H	196	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9A