Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G9C entry

There are 10 chains in PDB entry 9G9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	GLU 752
H	GLU 3	PRO 345
C	LEU 3	ARG 137
B	MET 1	ARG 137
F	TYR 2	LEU 211
E	TYR 2	LEU 211
D	TYR 2	LYS 214
G	VAL 5	ILE 307
R	A -7	A 27
T	U 11	A 42

There are 89 helices in PDB entry 9G9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	13	Right-handed alpha
Helix 2	AA2	A	14	22	Right-handed alpha
Helix 3	AA3	A	34	42	Right-handed alpha
Helix 4	AA4	A	43	48	Right-handed alpha
Helix 5	AA5	A	49	57	Right-handed alpha
Helix 6	AA6	A	77	86	Right-handed alpha
Helix 7	AA7	A	150	164	Right-handed alpha
Helix 8	AA8	A	176	187	Right-handed alpha
Helix 9	AA9	A	202	225	Right-handed alpha
Helix 10	AB1	A	228	235	Right-handed alpha
Helix 11	AB2	A	238	244	Right-handed alpha
Helix 12	AB3	A	258	264	Right-handed alpha
Helix 13	AB4	A	267	269	Right-handed 310
Helix 14	AB5	A	270	298	Right-handed alpha
Helix 15	AB6	A	300	302	Right-handed 310
Helix 16	AB7	A	319	342	Right-handed alpha
Helix 17	AB8	A	356	360	Right-handed alpha
Helix 18	AB9	A	361	363	Right-handed 310
Helix 19	AC1	A	364	383	Right-handed alpha
Helix 20	AC2	A	386	395	Right-handed alpha
Helix 21	AC3	A	420	436	Right-handed alpha
Helix 22	AC4	A	459	470	Right-handed alpha
Helix 23	AC5	A	497	501	Right-handed 310
Helix 24	AC6	A	502	509	Right-handed alpha
Helix 25	AC7	A	510	513	Right-handed 310
Helix 26	AC8	A	532	540	Right-handed alpha
Helix 27	AC9	A	542	546	Right-handed 310
Helix 28	AD1	A	547	564	Right-handed alpha
Helix 29	AD2	A	564	570	Right-handed alpha
Helix 30	AD3	A	591	610	Right-handed alpha
Helix 31	AD4	A	627	645	Right-handed alpha
Helix 32	AD5	A	660	666	Right-handed alpha
Helix 33	AD6	A	672	683	Right-handed alpha
Helix 34	AD7	A	687	701	Right-handed alpha
Helix 35	AD8	A	702	717	Right-handed alpha
Helix 36	AD9	A	719	732	Right-handed alpha
Helix 37	AE1	A	732	751	Right-handed alpha
Helix 38	AE2	H	42	53	Right-handed alpha
Helix 39	AE3	H	55	66	Right-handed alpha
Helix 40	AE4	H	71	79	Right-handed alpha
Helix 41	AE5	H	82	87	Right-handed alpha
Helix 42	AE6	H	140	153	Right-handed alpha
Helix 43	AE7	H	174	176	Right-handed 310
Helix 44	AE8	H	218	237	Right-handed alpha
Helix 45	AE9	H	237	244	Right-handed alpha
Helix 46	AF1	H	244	253	Right-handed alpha
Helix 47	AF2	H	282	287	Right-handed alpha
Helix 48	AF3	H	288	304	Right-handed alpha
Helix 49	AF4	C	13	24	Right-handed alpha
Helix 50	AF5	C	43	64	Right-handed alpha
Helix 51	AF6	C	70	91	Right-handed alpha
Helix 52	AF7	C	91	102	Right-handed alpha
Helix 53	AF8	C	102	114	Right-handed alpha
Helix 54	AF9	C	115	136	Right-handed alpha
Helix 55	AG1	B	13	24	Right-handed alpha
Helix 56	AG2	B	29	33	Right-handed 310
Helix 57	AG3	B	43	64	Right-handed alpha
Helix 58	AG4	B	70	91	Right-handed alpha
Helix 59	AG5	B	91	102	Right-handed alpha
Helix 60	AG6	B	102	114	Right-handed alpha
Helix 61	AG7	B	115	136	Right-handed alpha
Helix 62	AG8	F	47	64	Right-handed alpha
Helix 63	AG9	F	71	75	Right-handed 310
Helix 64	AH1	F	76	84	Right-handed alpha
Helix 65	AH2	F	104	114	Right-handed alpha
Helix 66	AH3	F	161	179	Right-handed alpha
Helix 67	AH4	F	184	188	Right-handed 310
Helix 68	AH5	E	47	64	Right-handed alpha
Helix 69	AH6	E	71	75	Right-handed 310
Helix 70	AH7	E	76	84	Right-handed alpha
Helix 71	AH8	E	104	113	Right-handed alpha
Helix 72	AH9	E	161	179	Right-handed alpha
Helix 73	AI1	E	184	188	Right-handed 310
Helix 74	AI2	D	47	64	Right-handed alpha
Helix 75	AI3	D	76	84	Right-handed alpha
Helix 76	AI4	D	104	113	Right-handed alpha
Helix 77	AI5	D	114	116	Right-handed 310
Helix 78	AI6	D	158	160	Right-handed 310
Helix 79	AI7	D	161	178	Right-handed alpha
Helix 80	AI8	D	184	188	Right-handed 310
Helix 81	AI9	G	32	47	Right-handed alpha
Helix 82	AJ1	G	51	57	Right-handed alpha
Helix 83	AJ2	G	90	96	Right-handed alpha
Helix 84	AJ3	G	101	109	Right-handed alpha
Helix 85	AJ4	G	113	124	Right-handed alpha
Helix 86	AJ5	G	139	143	Right-handed 310
Helix 87	AJ6	G	169	187	Right-handed alpha
Helix 88	AJ7	G	206	214	Right-handed alpha
Helix 89	AJ8	G	229	238	Right-handed alpha

There are 25 sheets in PDB entry 9G9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	311	317	anti-parallel
Strand 3	A	247	257	anti-parallel
Strand 4	A	346	355	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	453	458	anti-parallel
Strand 3	A	438	442	anti-parallel
Strand 4	A	474	478	anti-parallel
Strand 5	A	489	491	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	579	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	523	530	anti-parallel
Strand 4	A	615	622	anti-parallel
Strand 5	A	650	652	parallel
Strand 6	A	658	659	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	4	12	anti-parallel
Strand 4	H	339	344	anti-parallel
Strand 5	H	268	269	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	25	first strand
Strand 2	H	125	129	anti-parallel
Strand 3	H	190	200	parallel
Strand 4	H	178	186	anti-parallel
Strand 5	H	90	97	parallel
Strand 6	H	37	41	anti-parallel
Strand 7	H	30	32	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	25	first strand
Strand 2	H	125	129	anti-parallel
Strand 3	H	190	200	parallel
Strand 4	H	178	186	anti-parallel
Strand 5	H	322	326	anti-parallel
Strand 6	H	334	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	37	38	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	10	11	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	35	38	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	101	103	anti-parallel
Strand 3	F	147	156	anti-parallel
Strand 4	F	96	98	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	101	103	anti-parallel
Strand 3	F	147	156	anti-parallel
Strand 4	F	3	13	anti-parallel
Strand 5	F	192	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	127	first strand
Strand 2	F	134	142	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	3	13	anti-parallel
Strand 5	E	192	196	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	3	13	anti-parallel
Strand 4	E	199	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	127	first strand
Strand 2	E	134	142	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	3	13	anti-parallel
Strand 5	D	192	203	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	90	92	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	127	first strand
Strand 2	D	134	142	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	161	166	anti-parallel
Strand 3	G	7	13	anti-parallel
Strand 4	G	199	204	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	98	100	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	136	first strand
Strand 2	G	147	156	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	275	first strand
Strand 2	G	219	222	anti-parallel
Strand 3	G	302	305	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	266	269	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	285	first strand
Strand 2	G	295	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9C