Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G9D entry

There are 12 chains in PDB entry 9G9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 6	ARG 137
B	ALA 4	ARG 137
F	TYR 2	LEU 211
E	TYR 2	LEU 211
D	TYR 2	LYS 214
G	VAL 5	ILE 307
R	A -7	G 30
T	C 8	A 42
I	TYR 2	LEU 211
J	LEU 3	ARG 137
H	GLU 3	PRO 345
A	ASN 2	GLU 753

There are100 helices in PDB entry 9G9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	6	10	Right-handed 310
Helix 2	AA2	C	13	25	Right-handed alpha
Helix 3	AA3	C	43	63	Right-handed alpha
Helix 4	AA4	C	70	91	Right-handed alpha
Helix 5	AA5	C	91	102	Right-handed alpha
Helix 6	AA6	C	102	114	Right-handed alpha
Helix 7	AA7	C	115	137	Right-handed alpha
Helix 8	AA8	B	6	10	Right-handed 310
Helix 9	AA9	B	13	25	Right-handed alpha
Helix 10	AB1	B	43	64	Right-handed alpha
Helix 11	AB2	B	70	91	Right-handed alpha
Helix 12	AB3	B	91	102	Right-handed alpha
Helix 13	AB4	B	102	114	Right-handed alpha
Helix 14	AB5	B	115	136	Right-handed alpha
Helix 15	AB6	F	47	64	Right-handed alpha
Helix 16	AB7	F	71	75	Right-handed 310
Helix 17	AB8	F	76	84	Right-handed alpha
Helix 18	AB9	F	104	115	Right-handed alpha
Helix 19	AC1	F	161	178	Right-handed alpha
Helix 20	AC2	F	184	188	Right-handed 310
Helix 21	AC3	E	47	64	Right-handed alpha
Helix 22	AC4	E	71	75	Right-handed 310
Helix 23	AC5	E	76	84	Right-handed alpha
Helix 24	AC6	E	104	113	Right-handed alpha
Helix 25	AC7	E	114	116	Right-handed 310
Helix 26	AC8	E	158	160	Right-handed 310
Helix 27	AC9	E	161	179	Right-handed alpha
Helix 28	AD1	E	184	188	Right-handed 310
Helix 29	AD2	D	47	64	Right-handed alpha
Helix 30	AD3	D	76	84	Right-handed alpha
Helix 31	AD4	D	104	113	Right-handed alpha
Helix 32	AD5	D	114	116	Right-handed 310
Helix 33	AD6	D	158	160	Right-handed 310
Helix 34	AD7	D	161	179	Right-handed alpha
Helix 35	AD8	D	184	188	Right-handed 310
Helix 36	AD9	G	32	47	Right-handed alpha
Helix 37	AE1	G	51	58	Right-handed alpha
Helix 38	AE2	G	90	96	Right-handed alpha
Helix 39	AE3	G	101	110	Right-handed alpha
Helix 40	AE4	G	113	124	Right-handed alpha
Helix 41	AE5	G	137	142	Right-handed alpha
Helix 42	AE6	G	169	187	Right-handed alpha
Helix 43	AE7	G	206	214	Right-handed alpha
Helix 44	AE8	G	229	237	Right-handed alpha
Helix 45	AE9	I	47	64	Right-handed alpha
Helix 46	AF1	I	76	84	Right-handed alpha
Helix 47	AF2	I	104	114	Right-handed alpha
Helix 48	AF3	I	158	160	Right-handed 310
Helix 49	AF4	I	161	179	Right-handed alpha
Helix 50	AF5	J	6	10	Right-handed 310
Helix 51	AF6	J	13	24	Right-handed alpha
Helix 52	AF7	J	43	64	Right-handed alpha
Helix 53	AF8	J	70	91	Right-handed alpha
Helix 54	AF9	J	91	102	Right-handed alpha
Helix 55	AG1	J	102	114	Right-handed alpha
Helix 56	AG2	J	115	137	Right-handed alpha
Helix 57	AG3	H	42	53	Right-handed alpha
Helix 58	AG4	H	55	66	Right-handed alpha
Helix 59	AG5	H	71	80	Right-handed alpha
Helix 60	AG6	H	82	89	Right-handed alpha
Helix 61	AG7	H	140	153	Right-handed alpha
Helix 62	AG8	H	174	176	Right-handed 310
Helix 63	AG9	H	218	237	Right-handed alpha
Helix 64	AH1	H	237	243	Right-handed alpha
Helix 65	AH2	H	244	253	Right-handed alpha
Helix 66	AH3	H	282	287	Right-handed alpha
Helix 67	AH4	H	288	304	Right-handed alpha
Helix 68	AH5	A	3	13	Right-handed alpha
Helix 69	AH6	A	15	23	Right-handed alpha
Helix 70	AH7	A	33	44	Right-handed alpha
Helix 71	AH8	A	45	48	Right-handed 310
Helix 72	AH9	A	49	61	Right-handed alpha
Helix 73	AI1	A	76	85	Right-handed alpha
Helix 74	AI2	A	150	168	Right-handed alpha
Helix 75	AI3	A	175	188	Right-handed alpha
Helix 76	AI4	A	203	225	Right-handed alpha
Helix 77	AI5	A	242	247	Right-handed alpha
Helix 78	AI6	A	259	265	Right-handed alpha
Helix 79	AI7	A	271	299	Right-handed alpha
Helix 80	AI8	A	301	303	Right-handed 310
Helix 81	AI9	A	320	342	Right-handed alpha
Helix 82	AJ1	A	356	361	Right-handed alpha
Helix 83	AJ2	A	362	364	Right-handed 310
Helix 84	AJ3	A	365	385	Right-handed alpha
Helix 85	AJ4	A	387	395	Right-handed alpha
Helix 86	AJ5	A	421	437	Right-handed alpha
Helix 87	AJ6	A	460	471	Right-handed alpha
Helix 88	AJ7	A	499	502	Right-handed 310
Helix 89	AJ8	A	503	510	Right-handed alpha
Helix 90	AJ9	A	511	516	Right-handed alpha
Helix 91	AK1	A	533	541	Right-handed alpha
Helix 92	AK2	A	548	571	Right-handed alpha
Helix 93	AK3	A	592	611	Right-handed alpha
Helix 94	AK4	A	628	646	Right-handed alpha
Helix 95	AK5	A	661	667	Right-handed alpha
Helix 96	AK6	A	673	684	Right-handed alpha
Helix 97	AK7	A	688	699	Right-handed alpha
Helix 98	AK8	A	704	717	Right-handed alpha
Helix 99	AK9	A	720	733	Right-handed alpha
Helix 100	AL1	A	733	752	Right-handed alpha

There are 28 sheets in PDB entry 9G9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	151	156	anti-parallel
Strand 3	F	3	13	anti-parallel
Strand 4	F	147	149	anti-parallel
Strand 5	F	102	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	151	156	anti-parallel
Strand 3	F	3	13	anti-parallel
Strand 4	F	192	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	127	first strand
Strand 2	F	134	142	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	96	98	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	3	13	anti-parallel
Strand 5	E	192	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	124	first strand
Strand 2	E	137	142	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	102	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	3	13	anti-parallel
Strand 4	D	192	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	90	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	127	first strand
Strand 2	D	134	142	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	167	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	167	anti-parallel
Strand 3	G	7	13	anti-parallel
Strand 4	G	199	204	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	98	100	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	136	first strand
Strand 2	G	147	156	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	241	first strand
Strand 2	G	274	275	anti-parallel
Strand 3	G	219	222	anti-parallel
Strand 4	G	302	305	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	266	269	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	285	first strand
Strand 2	G	295	296	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	103	first strand
Strand 2	I	147	149	anti-parallel
Strand 3	I	4	13	anti-parallel
Strand 4	I	151	155	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	103	first strand
Strand 2	I	147	149	anti-parallel
Strand 3	I	4	13	anti-parallel
Strand 4	I	192	203	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	43	44	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	127	first strand
Strand 2	I	134	142	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	26	first strand
Strand 2	J	37	38	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	4	12	anti-parallel
Strand 4	H	339	340	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	4	12	anti-parallel
Strand 4	H	343	344	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	25	first strand
Strand 2	H	125	129	anti-parallel
Strand 3	H	190	200	parallel
Strand 4	H	178	186	anti-parallel
Strand 5	H	90	96	parallel
Strand 6	H	37	41	anti-parallel
Strand 7	H	30	32	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	312	318	anti-parallel
Strand 3	A	250	258	anti-parallel
Strand 4	A	347	355	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	454	459	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	475	479	anti-parallel
Strand 5	A	489	492	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	580	first strand
Strand 2	A	585	591	anti-parallel
Strand 3	A	524	531	anti-parallel
Strand 4	A	616	623	anti-parallel
Strand 5	A	651	653	parallel
Strand 6	A	659	660	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9D