Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G9E entry

There are 9 chains in PDB entry 9G9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLU 753
C	ASN 15	ARG 137
B	ASN 15	ARG 137
D	MET 1	LYS 214
E	MET 1	LYS 214
F	TYR 2	PHE 206
G	LEU 4	ILE 307
H	GLU 3	PRO 345
R	A -7	A 17

There are 85 helices in PDB entry 9G9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	16	23	Right-handed alpha
Helix 3	AA3	A	32	42	Right-handed alpha
Helix 4	AA4	A	49	58	Right-handed alpha
Helix 5	AA5	A	74	87	Right-handed alpha
Helix 6	AA6	A	115	118	Right-handed 310
Helix 7	AA7	A	120	125	Right-handed alpha
Helix 8	AA8	A	150	168	Right-handed alpha
Helix 9	AA9	A	175	188	Right-handed alpha
Helix 10	AB1	A	203	225	Right-handed alpha
Helix 11	AB2	A	230	235	Right-handed alpha
Helix 12	AB3	A	237	247	Right-handed alpha
Helix 13	AB4	A	259	266	Right-handed alpha
Helix 14	AB5	A	271	274	Right-handed 310
Helix 15	AB6	A	275	298	Right-handed alpha
Helix 16	AB7	A	301	303	Right-handed 310
Helix 17	AB8	A	320	342	Right-handed alpha
Helix 18	AB9	A	357	362	Right-handed alpha
Helix 19	AC1	A	367	384	Right-handed alpha
Helix 20	AC2	A	387	396	Right-handed alpha
Helix 21	AC3	A	421	431	Right-handed alpha
Helix 22	AC4	A	460	471	Right-handed alpha
Helix 23	AC5	A	499	502	Right-handed 310
Helix 24	AC6	A	503	508	Right-handed alpha
Helix 25	AC7	A	511	516	Right-handed 310
Helix 26	AC8	A	533	540	Right-handed alpha
Helix 27	AC9	A	543	547	Right-handed 310
Helix 28	AD1	A	548	565	Right-handed alpha
Helix 29	AD2	A	565	571	Right-handed alpha
Helix 30	AD3	A	592	610	Right-handed alpha
Helix 31	AD4	A	628	644	Right-handed alpha
Helix 32	AD5	A	662	667	Right-handed alpha
Helix 33	AD6	A	673	683	Right-handed alpha
Helix 34	AD7	A	688	701	Right-handed alpha
Helix 35	AD8	A	703	717	Right-handed alpha
Helix 36	AD9	A	720	733	Right-handed alpha
Helix 37	AE1	A	736	751	Right-handed alpha
Helix 38	AE2	C	16	25	Right-handed alpha
Helix 39	AE3	C	43	65	Right-handed alpha
Helix 40	AE4	C	70	91	Right-handed alpha
Helix 41	AE5	C	91	102	Right-handed alpha
Helix 42	AE6	C	102	114	Right-handed alpha
Helix 43	AE7	C	115	137	Right-handed alpha
Helix 44	AE8	B	16	24	Right-handed alpha
Helix 45	AE9	B	43	64	Right-handed alpha
Helix 46	AF1	B	70	91	Right-handed alpha
Helix 47	AF2	B	91	102	Right-handed alpha
Helix 48	AF3	B	102	114	Right-handed alpha
Helix 49	AF4	B	115	136	Right-handed alpha
Helix 50	AF5	D	47	64	Right-handed alpha
Helix 51	AF6	D	76	84	Right-handed alpha
Helix 52	AF7	D	104	113	Right-handed alpha
Helix 53	AF8	D	114	116	Right-handed 310
Helix 54	AF9	D	161	178	Right-handed alpha
Helix 55	AG1	D	184	188	Right-handed 310
Helix 56	AG2	E	47	64	Right-handed alpha
Helix 57	AG3	E	71	75	Right-handed 310
Helix 58	AG4	E	76	84	Right-handed alpha
Helix 59	AG5	E	104	113	Right-handed alpha
Helix 60	AG6	E	161	177	Right-handed alpha
Helix 61	AG7	E	184	188	Right-handed 310
Helix 62	AG8	F	47	63	Right-handed alpha
Helix 63	AG9	F	76	84	Right-handed alpha
Helix 64	AH1	F	104	112	Right-handed alpha
Helix 65	AH2	F	161	179	Right-handed alpha
Helix 66	AH3	F	184	188	Right-handed 310
Helix 67	AH4	G	32	47	Right-handed alpha
Helix 68	AH5	G	51	57	Right-handed alpha
Helix 69	AH6	G	89	96	Right-handed alpha
Helix 70	AH7	G	103	110	Right-handed alpha
Helix 71	AH8	G	113	124	Right-handed alpha
Helix 72	AH9	G	139	143	Right-handed 310
Helix 73	AI1	G	169	187	Right-handed alpha
Helix 74	AI2	G	206	214	Right-handed alpha
Helix 75	AI3	G	229	237	Right-handed alpha
Helix 76	AI4	H	42	53	Right-handed alpha
Helix 77	AI5	H	55	66	Right-handed alpha
Helix 78	AI6	H	71	80	Right-handed alpha
Helix 79	AI7	H	82	90	Right-handed alpha
Helix 80	AI8	H	140	153	Right-handed alpha
Helix 81	AI9	H	218	237	Right-handed alpha
Helix 82	AJ1	H	237	244	Right-handed alpha
Helix 83	AJ2	H	244	254	Right-handed alpha
Helix 84	AJ3	H	281	287	Right-handed alpha
Helix 85	AJ4	H	291	304	Right-handed alpha

There are 25 sheets in PDB entry 9G9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	130	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	312	318	anti-parallel
Strand 3	A	248	258	anti-parallel
Strand 4	A	347	356	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	454	459	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	475	479	anti-parallel
Strand 5	A	489	492	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	582	first strand
Strand 2	A	585	591	anti-parallel
Strand 3	A	523	531	anti-parallel
Strand 4	A	616	624	anti-parallel
Strand 5	A	650	653	parallel
Strand 6	A	659	661	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	33	35	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	3	13	anti-parallel
Strand 5	D	192	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	127	first strand
Strand 2	D	134	142	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	96	98	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	3	13	anti-parallel
Strand 5	E	192	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	127	first strand
Strand 2	E	134	141	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	147	155	anti-parallel
Strand 3	F	102	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	147	155	anti-parallel
Strand 3	F	4	13	anti-parallel
Strand 4	F	192	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	87	first strand
Strand 2	F	90	92	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	137	142	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	5	13	anti-parallel
Strand 4	G	199	205	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	98	100	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	134	first strand
Strand 2	G	149	156	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	275	first strand
Strand 2	G	219	222	anti-parallel
Strand 3	G	302	305	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	266	269	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	285	first strand
Strand 2	G	295	297	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	4	11	anti-parallel
Strand 4	H	338	344	anti-parallel
Strand 5	H	268	270	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	25	first strand
Strand 2	H	125	129	anti-parallel
Strand 3	H	190	197	parallel
Strand 4	H	179	186	anti-parallel
Strand 5	H	92	96	parallel
Strand 6	H	37	40	anti-parallel
Strand 7	H	29	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9E