Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G9K entry

There are 12 chains in PDB entry 9G9K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLU 753
C	ASN 15	ARG 137
B	ASN 15	ARG 137
D	MET 1	LYS 214
E	MET 1	LYS 214
F	TYR 2	LEU 211
G	LEU 4	ILE 307
R	A -7	G 22
T	C 16	U 37
J	LEU 3	ARG 137
H	GLU 3	PRO 345
I	MET 1	LYS 214

There are 98 helices in PDB entry 9G9K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	16	23	Right-handed alpha
Helix 3	AA3	A	32	44	Right-handed alpha
Helix 4	AA4	A	45	48	Right-handed 310
Helix 5	AA5	A	49	58	Right-handed alpha
Helix 6	AA6	A	60	68	Right-handed alpha
Helix 7	AA7	A	73	87	Right-handed alpha
Helix 8	AA8	A	114	118	Right-handed 310
Helix 9	AA9	A	120	125	Right-handed alpha
Helix 10	AB1	A	150	168	Right-handed alpha
Helix 11	AB2	A	172	185	Right-handed alpha
Helix 12	AB3	A	186	190	Right-handed 310
Helix 13	AB4	A	203	225	Right-handed alpha
Helix 14	AB5	A	229	234	Right-handed alpha
Helix 15	AB6	A	239	247	Right-handed alpha
Helix 16	AB7	A	259	266	Right-handed alpha
Helix 17	AB8	A	271	298	Right-handed alpha
Helix 18	AB9	A	320	342	Right-handed alpha
Helix 19	AC1	A	343	346	Right-handed 310
Helix 20	AC2	A	356	362	Right-handed alpha
Helix 21	AC3	A	366	384	Right-handed alpha
Helix 22	AC4	A	387	396	Right-handed alpha
Helix 23	AC5	A	422	431	Right-handed alpha
Helix 24	AC6	A	460	471	Right-handed alpha
Helix 25	AC7	A	503	510	Right-handed alpha
Helix 26	AC8	A	510	516	Right-handed alpha
Helix 27	AC9	A	533	540	Right-handed alpha
Helix 28	AD1	A	548	565	Right-handed alpha
Helix 29	AD2	A	565	571	Right-handed alpha
Helix 30	AD3	A	592	610	Right-handed alpha
Helix 31	AD4	A	628	645	Right-handed alpha
Helix 32	AD5	A	662	667	Right-handed alpha
Helix 33	AD6	A	673	684	Right-handed alpha
Helix 34	AD7	A	690	701	Right-handed alpha
Helix 35	AD8	A	703	718	Right-handed alpha
Helix 36	AD9	A	720	733	Right-handed alpha
Helix 37	AE1	A	736	751	Right-handed alpha
Helix 38	AE2	C	16	24	Right-handed alpha
Helix 39	AE3	C	43	65	Right-handed alpha
Helix 40	AE4	C	70	91	Right-handed alpha
Helix 41	AE5	C	91	102	Right-handed alpha
Helix 42	AE6	C	102	114	Right-handed alpha
Helix 43	AE7	C	115	137	Right-handed alpha
Helix 44	AE8	B	16	24	Right-handed alpha
Helix 45	AE9	B	43	64	Right-handed alpha
Helix 46	AF1	B	70	91	Right-handed alpha
Helix 47	AF2	B	91	102	Right-handed alpha
Helix 48	AF3	B	102	114	Right-handed alpha
Helix 49	AF4	B	115	137	Right-handed alpha
Helix 50	AF5	D	47	64	Right-handed alpha
Helix 51	AF6	D	76	84	Right-handed alpha
Helix 52	AF7	D	104	113	Right-handed alpha
Helix 53	AF8	D	114	116	Right-handed 310
Helix 54	AF9	D	161	178	Right-handed alpha
Helix 55	AG1	D	184	188	Right-handed 310
Helix 56	AG2	E	47	64	Right-handed alpha
Helix 57	AG3	E	76	84	Right-handed alpha
Helix 58	AG4	E	104	113	Right-handed alpha
Helix 59	AG5	E	114	116	Right-handed 310
Helix 60	AG6	E	158	160	Right-handed 310
Helix 61	AG7	E	161	179	Right-handed alpha
Helix 62	AG8	E	184	188	Right-handed 310
Helix 63	AG9	F	47	63	Right-handed alpha
Helix 64	AH1	F	76	84	Right-handed alpha
Helix 65	AH2	F	104	114	Right-handed alpha
Helix 66	AH3	F	158	160	Right-handed 310
Helix 67	AH4	F	161	179	Right-handed alpha
Helix 68	AH5	G	32	47	Right-handed alpha
Helix 69	AH6	G	51	56	Right-handed alpha
Helix 70	AH7	G	89	96	Right-handed alpha
Helix 71	AH8	G	103	109	Right-handed alpha
Helix 72	AH9	G	113	123	Right-handed alpha
Helix 73	AI1	G	137	142	Right-handed alpha
Helix 74	AI2	G	169	187	Right-handed alpha
Helix 75	AI3	G	206	215	Right-handed alpha
Helix 76	AI4	G	229	237	Right-handed alpha
Helix 77	AI5	J	13	25	Right-handed alpha
Helix 78	AI6	J	43	64	Right-handed alpha
Helix 79	AI7	J	70	91	Right-handed alpha
Helix 80	AI8	J	91	102	Right-handed alpha
Helix 81	AI9	J	102	114	Right-handed alpha
Helix 82	AJ1	J	115	136	Right-handed alpha
Helix 83	AJ2	H	43	54	Right-handed alpha
Helix 84	AJ3	H	55	66	Right-handed alpha
Helix 85	AJ4	H	71	80	Right-handed alpha
Helix 86	AJ5	H	82	89	Right-handed alpha
Helix 87	AJ6	H	140	153	Right-handed alpha
Helix 88	AJ7	H	174	176	Right-handed 310
Helix 89	AJ8	H	218	237	Right-handed alpha
Helix 90	AJ9	H	237	244	Right-handed alpha
Helix 91	AK1	H	244	253	Right-handed alpha
Helix 92	AK2	H	281	287	Right-handed alpha
Helix 93	AK3	H	288	304	Right-handed alpha
Helix 94	AK4	I	47	62	Right-handed alpha
Helix 95	AK5	I	76	83	Right-handed alpha
Helix 96	AK6	I	104	113	Right-handed alpha
Helix 97	AK7	I	114	116	Right-handed 310
Helix 98	AK8	I	161	179	Right-handed alpha

There are 28 sheets in PDB entry 9G9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	312	318	anti-parallel
Strand 3	A	250	258	anti-parallel
Strand 4	A	347	355	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	454	459	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	475	478	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	580	first strand
Strand 2	A	587	591	anti-parallel
Strand 3	A	524	531	anti-parallel
Strand 4	A	616	623	anti-parallel
Strand 5	A	650	653	parallel
Strand 6	A	660	661	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	37	38	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	96	103	anti-parallel
Strand 3	D	147	156	anti-parallel
Strand 4	D	3	13	anti-parallel
Strand 5	D	192	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	127	first strand
Strand 2	D	134	142	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	96	98	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	101	103	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	3	13	anti-parallel
Strand 5	E	192	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	128	first strand
Strand 2	E	133	142	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	103	first strand
Strand 2	F	147	156	anti-parallel
Strand 3	F	3	13	anti-parallel
Strand 4	F	192	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	137	142	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	161	168	anti-parallel
Strand 3	G	5	13	anti-parallel
Strand 4	G	199	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	98	100	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	136	first strand
Strand 2	G	147	155	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	275	first strand
Strand 2	G	219	224	anti-parallel
Strand 3	G	301	305	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	266	269	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	285	first strand
Strand 2	G	295	297	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	205	212	anti-parallel
Strand 3	H	4	12	anti-parallel
Strand 4	H	339	344	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	125	127	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	32	first strand
Strand 2	H	37	40	anti-parallel
Strand 3	H	92	95	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	181	first strand
Strand 2	H	197	200	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	186	first strand
Strand 2	H	190	191	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	98	first strand
Strand 2	I	147	156	anti-parallel
Strand 3	I	102	103	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	98	first strand
Strand 2	I	147	156	anti-parallel
Strand 3	I	3	13	anti-parallel
Strand 4	I	192	203	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	43	44	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	127	first strand
Strand 2	I	134	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G9K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9K