Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G9N entry

There are 3 chains in PDB entry 9G9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 416
B
 ALA 0SER 127
C
 VAL 2SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9G9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 54Right-handed alpha
Helix 2
AA2
A
58 70Right-handed alpha
Helix 3
AA3
A
72 101Right-handed alpha
Helix 4
AA4
A
101 111Right-handed alpha
Helix 5
AA5
A
115 142Right-handed alpha
Helix 6
AA6
A
144 185Right-handed alpha
Helix 7
AA7
A
186 197Right-handed alpha
Helix 8
AA8
A
201 206Right-handed 310
Helix 9
AA9
A
210 229Right-handed alpha
Helix 10
AB1
A
230 246Right-handed alpha
Helix 11
AB2
A
247 274Right-handed alpha
Helix 12
AB3
A
275 283Right-handed alpha
Helix 13
AB4
A
285 314Right-handed alpha
Helix 14
AB5
A
314 323Right-handed alpha
Helix 15
AB6
A
324 331Right-handed 310
Helix 16
AB7
A
332 358Right-handed alpha
Helix 17
AB8
A
359 386Right-handed alpha
Helix 18
AB9
A
386 414Right-handed alpha
Helix 19
AC1
B
28 32Right-handed 310
Helix 20
AC2
B
87 91Right-handed 310
Helix 21
AC3
B
100 105Right-handed alpha
Helix 22
AC4
B
107 115Right-handed 310
Helix 23
AC5
C
28 30Right-handed 310
Helix 24
AC6
C
87 91Right-handed 310
Helix 25
AC7
C
107 111Right-handed 310
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There are 5 sheets in PDB entry 9G9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
122 126parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
69 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
118 123parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
118 123parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
113 114anti-parallel
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