Analysis of interatomic Contacts of Structural Units in PDB entry:
9G9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G9R entry

There are 2 chains in PDB entry 9G9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7PRO 400
B
 ALA 7PRO 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 9G9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
95 106Right-handed alpha
Helix 5
AA5
A
107 112Right-handed alpha
Helix 6
AA6
A
114 133Right-handed alpha
Helix 7
AA7
A
138 142Right-handed alpha
Helix 8
AA8
A
144 156Right-handed alpha
Helix 9
AA9
A
161 163Right-handed 310
Helix 10
AB1
A
164 176Right-handed alpha
Helix 11
AB2
A
180 185Right-handed alpha
Helix 12
AB3
A
186 188Right-handed 310
Helix 13
AB4
A
189 201Right-handed alpha
Helix 14
AB5
A
202 206Right-handed 310
Helix 15
AB6
A
210 221Right-handed alpha
Helix 16
AB7
A
227 240Right-handed alpha
Helix 17
AB8
A
241 257Right-handed alpha
Helix 18
AB9
A
258 268Right-handed alpha
Helix 19
AC1
A
271 284Right-handed alpha
Helix 20
AC2
A
314 319Right-handed alpha
Helix 21
AC3
A
351 370Right-handed alpha
Helix 22
AC4
B
17 23Right-handed alpha
Helix 23
AC5
B
24 35Right-handed alpha
Helix 24
AC6
B
50 60Right-handed alpha
Helix 25
AC7
B
95 106Right-handed alpha
Helix 26
AC8
B
107 133Right-handed alpha
Helix 27
AC9
B
138 142Right-handed alpha
Helix 28
AD1
B
144 156Right-handed alpha
Helix 29
AD2
B
161 163Right-handed 310
Helix 30
AD3
B
164 175Right-handed alpha
Helix 31
AD4
B
187 202Right-handed alpha
Helix 32
AD5
B
203 206Right-handed 310
Helix 33
AD6
B
210 221Right-handed alpha
Helix 34
AD7
B
227 240Right-handed alpha
Helix 35
AD8
B
241 258Right-handed alpha
Helix 36
AD9
B
258 268Right-handed alpha
Helix 37
AE1
B
270 284Right-handed alpha
Helix 38
AE2
B
314 318Right-handed alpha
Helix 39
AE3
B
351 370Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9G9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
38 40parallel
Strand 3
A
45 48anti-parallel
Strand 4
A
309 313parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
64 65anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
394 398anti-parallel
Strand 3
A
372 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
389 392anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
38 40parallel
Strand 3
B
46 48anti-parallel
Strand 4
B
309 313parallel
Strand 5
B
288 293anti-parallel
Strand 6
B
64 65anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
394 398anti-parallel
Strand 3
B
372 375anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 382first strand
Strand 2
B
389 392anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il