Analysis of interatomic Contacts of Structural Units in PDB entry:
9GA4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GA4 entry

There are 6 chains in PDB entry 9GA4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 953
B	MET 1	VAL 953
C	ARG 1	LEU 589
E	T 1	T 37
F	T 1	T 37
D	MET 1	LEU 591

There are128 helices in PDB entry 9GA4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	45	Right-handed alpha
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	98	103	Right-handed alpha
Helix 4	AA4	A	104	116	Right-handed alpha
Helix 5	AA5	A	132	142	Right-handed alpha
Helix 6	AA6	A	163	174	Right-handed alpha
Helix 7	AA7	A	214	229	Right-handed alpha
Helix 8	AA8	A	277	281	Right-handed 310
Helix 9	AA9	A	306	310	Right-handed 310
Helix 10	AB1	A	312	317	Right-handed 310
Helix 11	AB2	A	319	336	Right-handed alpha
Helix 12	AB3	A	348	357	Right-handed alpha
Helix 13	AB4	A	381	394	Right-handed alpha
Helix 14	AB5	A	398	408	Right-handed alpha
Helix 15	AB6	A	421	431	Right-handed alpha
Helix 16	AB7	A	443	448	Right-handed alpha
Helix 17	AB8	A	449	458	Right-handed alpha
Helix 18	AB9	A	472	488	Right-handed alpha
Helix 19	AC1	A	489	492	Right-handed 310
Helix 20	AC2	A	497	501	Right-handed 310
Helix 21	AC3	A	502	518	Right-handed alpha
Helix 22	AC4	A	534	552	Right-handed alpha
Helix 23	AC5	A	579	583	Right-handed 310
Helix 24	AC6	A	600	607	Right-handed alpha
Helix 25	AC7	A	659	665	Right-handed alpha
Helix 26	AC8	A	667	675	Right-handed alpha
Helix 27	AC9	A	691	695	Right-handed 310
Helix 28	AD1	A	720	730	Right-handed alpha
Helix 29	AD2	A	731	737	Right-handed alpha
Helix 30	AD3	A	785	790	Right-handed alpha
Helix 31	AD4	A	792	796	Right-handed 310
Helix 32	AD5	A	797	804	Right-handed alpha
Helix 33	AD6	A	816	830	Right-handed alpha
Helix 34	AD7	A	839	843	Right-handed 310
Helix 35	AD8	A	849	856	Right-handed alpha
Helix 36	AD9	A	877	895	Right-handed alpha
Helix 37	AE1	A	905	910	Right-handed alpha
Helix 38	AE2	A	921	925	Right-handed 310
Helix 39	AE3	A	933	940	Right-handed alpha
Helix 40	AE4	A	943	952	Right-handed alpha
Helix 41	AE5	B	37	45	Right-handed alpha
Helix 42	AE6	B	46	58	Right-handed alpha
Helix 43	AE7	B	98	103	Right-handed alpha
Helix 44	AE8	B	105	117	Right-handed alpha
Helix 45	AE9	B	134	143	Right-handed alpha
Helix 46	AF1	B	163	174	Right-handed alpha
Helix 47	AF2	B	214	227	Right-handed alpha
Helix 48	AF3	B	245	249	Right-handed 310
Helix 49	AF4	B	295	300	Right-handed 310
Helix 50	AF5	B	306	310	Right-handed 310
Helix 51	AF6	B	312	317	Right-handed 310
Helix 52	AF7	B	319	336	Right-handed alpha
Helix 53	AF8	B	347	357	Right-handed alpha
Helix 54	AF9	B	384	394	Right-handed alpha
Helix 55	AG1	B	399	405	Right-handed alpha
Helix 56	AG2	B	421	431	Right-handed alpha
Helix 57	AG3	B	443	448	Right-handed alpha
Helix 58	AG4	B	449	458	Right-handed alpha
Helix 59	AG5	B	465	469	Right-handed 310
Helix 60	AG6	B	470	488	Right-handed alpha
Helix 61	AG7	B	497	501	Right-handed 310
Helix 62	AG8	B	502	516	Right-handed alpha
Helix 63	AG9	B	542	550	Right-handed alpha
Helix 64	AH1	B	590	597	Right-handed alpha
Helix 65	AH2	B	602	607	Right-handed alpha
Helix 66	AH3	B	659	665	Right-handed alpha
Helix 67	AH4	B	667	676	Right-handed alpha
Helix 68	AH5	B	691	695	Right-handed 310
Helix 69	AH6	B	713	719	Right-handed alpha
Helix 70	AH7	B	719	729	Right-handed alpha
Helix 71	AH8	B	730	735	Right-handed 310
Helix 72	AH9	B	740	745	Right-handed 310
Helix 73	AI1	B	787	791	Right-handed 310
Helix 74	AI2	B	792	796	Right-handed 310
Helix 75	AI3	B	797	804	Right-handed alpha
Helix 76	AI4	B	805	810	Right-handed alpha
Helix 77	AI5	B	816	830	Right-handed alpha
Helix 78	AI6	B	839	843	Right-handed 310
Helix 79	AI7	B	850	855	Right-handed alpha
Helix 80	AI8	B	877	894	Right-handed alpha
Helix 81	AI9	B	904	911	Right-handed alpha
Helix 82	AJ1	B	921	925	Right-handed 310
Helix 83	AJ2	B	933	938	Right-handed alpha
Helix 84	AJ3	B	943	952	Right-handed alpha
Helix 85	AJ4	C	17	30	Right-handed alpha
Helix 86	AJ5	C	45	58	Right-handed alpha
Helix 87	AJ6	C	67	82	Right-handed alpha
Helix 88	AJ7	C	120	132	Right-handed alpha
Helix 89	AJ8	C	142	147	Right-handed 310
Helix 90	AJ9	C	151	158	Right-handed alpha
Helix 91	AK1	C	169	180	Right-handed alpha
Helix 92	AK2	C	252	278	Right-handed alpha
Helix 93	AK3	C	279	300	Right-handed alpha
Helix 94	AK4	C	305	308	Right-handed 310
Helix 95	AK5	C	309	315	Right-handed alpha
Helix 96	AK6	C	324	329	Right-handed alpha
Helix 97	AK7	C	339	363	Right-handed alpha
Helix 98	AK8	C	368	374	Right-handed alpha
Helix 99	AK9	C	378	386	Right-handed alpha
Helix 100	AL1	C	397	405	Right-handed alpha
Helix 101	AL2	C	431	443	Right-handed alpha
Helix 102	AL3	C	444	446	Right-handed 310
Helix 103	AL4	C	455	469	Right-handed alpha
Helix 104	AL5	C	481	494	Right-handed alpha
Helix 105	AL6	C	531	544	Right-handed alpha
Helix 106	AL7	C	558	582	Right-handed alpha
Helix 107	AL8	D	18	32	Right-handed alpha
Helix 108	AL9	D	47	58	Right-handed alpha
Helix 109	AM1	D	69	84	Right-handed alpha
Helix 110	AM2	D	119	133	Right-handed alpha
Helix 111	AM3	D	144	149	Right-handed 310
Helix 112	AM4	D	153	160	Right-handed alpha
Helix 113	AM5	D	171	182	Right-handed alpha
Helix 114	AM6	D	254	280	Right-handed alpha
Helix 115	AM7	D	281	298	Right-handed alpha
Helix 116	AM8	D	307	310	Right-handed 310
Helix 117	AM9	D	311	317	Right-handed alpha
Helix 118	AN1	D	326	331	Right-handed alpha
Helix 119	AN2	D	341	365	Right-handed alpha
Helix 120	AN3	D	370	376	Right-handed alpha
Helix 121	AN4	D	380	388	Right-handed alpha
Helix 122	AN5	D	399	407	Right-handed alpha
Helix 123	AN6	D	432	446	Right-handed alpha
Helix 124	AN7	D	457	472	Right-handed alpha
Helix 125	AN8	D	483	496	Right-handed alpha
Helix 126	AN9	D	506	510	Right-handed 310
Helix 127	AO1	D	533	546	Right-handed alpha
Helix 128	AO2	D	560	585	Right-handed alpha

There are 25 sheets in PDB entry 9GA4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	15	23	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	523	526	parallel
Strand 3	A	554	557	parallel
Strand 4	A	27	31	parallel
Strand 5	A	571	574	parallel
Strand 6	A	585	589	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	149	156	anti-parallel
Strand 3	A	233	237	anti-parallel
Strand 4	A	248	251	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	183	186	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	626	630	anti-parallel
Strand 3	A	688	689	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	700	first strand
Strand 2	A	866	869	parallel
Strand 3	A	897	901	parallel
Strand 4	A	650	653	parallel
Strand 5	A	913	917	parallel
Strand 6	A	928	932	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	18	22	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	526	first strand
Strand 2	B	554	558	parallel
Strand 3	B	28	31	parallel
Strand 4	B	570	573	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	183	185	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	373	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	632	first strand
Strand 2	B	640	645	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	701	first strand
Strand 2	B	866	869	parallel
Strand 3	B	897	901	parallel
Strand 4	B	649	654	parallel
Strand 5	B	913	917	parallel
Strand 6	B	928	932	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	61	64	parallel
Strand 3	C	334	338	parallel
Strand 4	C	389	393	parallel
Strand 5	C	35	39	parallel
Strand 6	C	409	410	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	98	first strand
Strand 2	C	113	116	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	108	110	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	240	243	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	193	197	parallel
Strand 3	C	200	203	anti-parallel
Strand 4	C	211	216	anti-parallel
Strand 5	C	221	227	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	426	first strand
Strand 2	C	549	553	parallel
Strand 3	C	515	521	parallel
Strand 4	C	448	451	parallel
Strand 5	C	499	501	parallel
Strand 6	C	473	475	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	391	394	parallel
Strand 3	D	336	340	parallel
Strand 4	D	63	66	parallel
Strand 5	D	139	143	parallel
Strand 6	D	88	91	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	411	412	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	115	116	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	110	111	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	242	244	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	195	199	parallel
Strand 3	D	202	205	anti-parallel
Strand 4	D	213	219	anti-parallel
Strand 5	D	222	229	anti-parallel
Strand 6	D	236	239	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	428	first strand
Strand 2	D	551	555	parallel
Strand 3	D	519	523	parallel
Strand 4	D	451	454	parallel
Strand 5	D	501	504	parallel
Strand 6	D	475	477	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GA4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GA4