Analysis of interatomic Contacts of Structural Units in PDB entry:
9GA5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GA5 entry

There are 4 chains in PDB entry 9GA5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 953
B	MET 1	VAL 953
C	C 1	A 39
D	T -39	G -1

There are 80 helices in PDB entry 9GA5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	43	Right-handed alpha
Helix 2	AA2	A	45	56	Right-handed alpha
Helix 3	AA3	A	57	58	Right-handed 310
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	64	69	Right-handed alpha
Helix 6	AA6	A	87	91	Right-handed 310
Helix 7	AA7	A	98	103	Right-handed alpha
Helix 8	AA8	A	104	117	Right-handed alpha
Helix 9	AA9	A	269	274	Right-handed 310
Helix 10	AB1	A	295	300	Right-handed alpha
Helix 11	AB2	A	306	310	Right-handed 310
Helix 12	AB3	A	312	317	Right-handed 310
Helix 13	AB4	A	319	336	Right-handed alpha
Helix 14	AB5	A	347	357	Right-handed alpha
Helix 15	AB6	A	382	392	Right-handed alpha
Helix 16	AB7	A	396	405	Right-handed alpha
Helix 17	AB8	A	421	424	Right-handed 310
Helix 18	AB9	A	425	430	Right-handed alpha
Helix 19	AC1	A	441	448	Right-handed alpha
Helix 20	AC2	A	449	460	Right-handed alpha
Helix 21	AC3	A	463	488	Right-handed alpha
Helix 22	AC4	A	497	501	Right-handed 310
Helix 23	AC5	A	502	518	Right-handed alpha
Helix 24	AC6	A	534	550	Right-handed alpha
Helix 25	AC7	A	600	607	Right-handed alpha
Helix 26	AC8	A	659	665	Right-handed alpha
Helix 27	AC9	A	667	677	Right-handed alpha
Helix 28	AD1	A	691	695	Right-handed 310
Helix 29	AD2	A	713	718	Right-handed alpha
Helix 30	AD3	A	720	731	Right-handed alpha
Helix 31	AD4	A	731	738	Right-handed alpha
Helix 32	AD5	A	785	790	Right-handed alpha
Helix 33	AD6	A	797	804	Right-handed alpha
Helix 34	AD7	A	805	812	Right-handed alpha
Helix 35	AD8	A	816	830	Right-handed alpha
Helix 36	AD9	A	839	843	Right-handed 310
Helix 37	AE1	A	844	859	Right-handed alpha
Helix 38	AE2	A	877	893	Right-handed alpha
Helix 39	AE3	A	904	910	Right-handed alpha
Helix 40	AE4	A	921	925	Right-handed 310
Helix 41	AE5	A	933	938	Right-handed alpha
Helix 42	AE6	A	943	951	Right-handed alpha
Helix 43	AE7	B	37	43	Right-handed alpha
Helix 44	AE8	B	46	57	Right-handed alpha
Helix 45	AE9	B	98	103	Right-handed alpha
Helix 46	AF1	B	104	116	Right-handed alpha
Helix 47	AF2	B	269	274	Right-handed 310
Helix 48	AF3	B	312	317	Right-handed 310
Helix 49	AF4	B	318	319	Right-handed 310
Helix 50	AF5	B	320	336	Right-handed alpha
Helix 51	AF6	B	347	357	Right-handed alpha
Helix 52	AF7	B	382	393	Right-handed alpha
Helix 53	AF8	B	396	405	Right-handed alpha
Helix 54	AF9	B	421	426	Right-handed alpha
Helix 55	AG1	B	441	448	Right-handed alpha
Helix 56	AG2	B	449	458	Right-handed alpha
Helix 57	AG3	B	463	488	Right-handed alpha
Helix 58	AG4	B	502	518	Right-handed alpha
Helix 59	AG5	B	534	550	Right-handed alpha
Helix 60	AG6	B	591	596	Right-handed alpha
Helix 61	AG7	B	600	607	Right-handed alpha
Helix 62	AG8	B	659	665	Right-handed alpha
Helix 63	AG9	B	666	677	Right-handed alpha
Helix 64	AH1	B	691	695	Right-handed 310
Helix 65	AH2	B	713	719	Right-handed alpha
Helix 66	AH3	B	719	730	Right-handed alpha
Helix 67	AH4	B	731	737	Right-handed alpha
Helix 68	AH5	B	740	745	Right-handed 310
Helix 69	AH6	B	785	790	Right-handed alpha
Helix 70	AH7	B	791	796	Right-handed 310
Helix 71	AH8	B	797	804	Right-handed alpha
Helix 72	AH9	B	805	812	Right-handed alpha
Helix 73	AI1	B	816	830	Right-handed alpha
Helix 74	AI2	B	839	843	Right-handed 310
Helix 75	AI3	B	844	858	Right-handed alpha
Helix 76	AI4	B	877	894	Right-handed alpha
Helix 77	AI5	B	904	911	Right-handed alpha
Helix 78	AI6	B	921	925	Right-handed 310
Helix 79	AI7	B	933	940	Right-handed alpha
Helix 80	AI8	B	943	950	Right-handed alpha

There are 13 sheets in PDB entry 9GA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	4	10	anti-parallel
Strand 3	A	76	78	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	523	526	parallel
Strand 3	A	554	558	parallel
Strand 4	A	27	31	parallel
Strand 5	A	570	574	parallel
Strand 6	A	585	589	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	407	411	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	645	first strand
Strand 2	A	626	632	anti-parallel
Strand 3	A	688	690	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	701	first strand
Strand 2	A	866	869	parallel
Strand 3	A	897	901	parallel
Strand 4	A	649	654	parallel
Strand 5	A	913	917	parallel
Strand 6	A	928	932	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	764	first strand
Strand 2	A	772	775	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	4	10	anti-parallel
Strand 3	B	76	78	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	523	526	parallel
Strand 3	B	554	558	parallel
Strand 4	B	27	31	parallel
Strand 5	B	570	574	parallel
Strand 6	B	585	589	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	293	first strand
Strand 2	B	408	411	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	379	380	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	645	first strand
Strand 2	B	626	632	anti-parallel
Strand 3	B	688	690	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	701	first strand
Strand 2	B	865	869	parallel
Strand 3	B	897	901	parallel
Strand 4	B	650	654	parallel
Strand 5	B	913	917	parallel
Strand 6	B	928	932	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	764	first strand
Strand 2	B	772	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GA5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GA5