Analysis of interatomic Contacts of Structural Units in PDB entry:
9GAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GAG entry

There are 2 chains in PDB entry 9GAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 321GLN 639
B
 LYS 237VAL 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9GAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 349Right-handed alpha
Helix 2
AA2
A
350 365Right-handed alpha
Helix 3
AA3
A
368 382Right-handed alpha
Helix 4
AA4
A
384 396Right-handed alpha
Helix 5
AA5
A
402 416Right-handed alpha
Helix 6
AA6
A
418 432Right-handed alpha
Helix 7
AA7
A
436 440Right-handed 310
Helix 8
AA8
A
466 481Right-handed alpha
Helix 9
AA9
A
487 502Right-handed alpha
Helix 10
AB1
A
503 515Right-handed alpha
Helix 11
AB2
A
521 535Right-handed alpha
Helix 12
AB3
A
537 552Right-handed alpha
Helix 13
AB4
A
555 570Right-handed alpha
Helix 14
AB5
A
571 588Right-handed alpha
Helix 15
AB6
A
600 615Right-handed alpha
Helix 16
AB7
A
616 618Right-handed 310
Helix 17
AB8
A
619 625Right-handed alpha
Helix 18
AB9
A
627 635Right-handed alpha
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There are no sheets in PDB entry 9GAG
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il