Analysis of interatomic Contacts of Structural Units in PDB entry:
9GAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GAQ entry

There are 4 chains in PDB entry 9GAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 8 U 13
D
 U 1 U 7
B
 SER 403ALA 428
A
 ASP 16GLY 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9GAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
421 426Right-handed alpha
Helix 2
AA2
A
17 48Right-handed alpha
Helix 3
AA3
A
50 55Right-handed alpha
Helix 4
AA4
A
56 71Right-handed alpha
Helix 5
AA5
A
72 82Right-handed alpha
Helix 6
AA6
A
113 124Right-handed alpha
Helix 7
AA7
A
129 148Right-handed alpha
Helix 8
AA8
A
150 158Right-handed alpha
Helix 9
AA9
A
164 168Right-handed 310
Helix 10
AB1
A
177 184Right-handed alpha
Helix 11
AB2
A
185 203Right-handed alpha
Helix 12
AB3
A
209 230Right-handed alpha
Helix 13
AB4
A
232 245Right-handed alpha
Helix 14
AB5
A
249 263Right-handed alpha
Helix 15
AB6
A
277 287Right-handed alpha
Helix 16
AB7
A
290 295Right-handed alpha
Helix 17
AB8
A
301 309Right-handed alpha
Helix 18
AB9
A
321 335Right-handed alpha
Helix 19
AC1
A
340 349Right-handed alpha
Helix 20
AC2
A
354 358Right-handed 310
Helix 21
AC3
A
440 451Right-handed alpha
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There are 4 sheets in PDB entry 9GAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 417first strand
Strand 2
A
456 457anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
103 112anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
464 465anti-parallel
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