Analysis of interatomic Contacts of Structural Units in PDB entry:
9GAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GAZ entry

There are 14 chains in PDB entry 9GAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	SER 288
B	MET 2	SER 288
C	PHE 3	GLN 127
D	MET 2	SER 288
E	PHE 3	GLN 127
F	MET 2	SER 288
G	MET 2	SER 288
H	MET 2	SER 288
I	PHE 3	GLN 127
J	PHE 3	GLN 127
K	MET 2	SER 288
L	PHE 3	GLN 127
M	PHE 3	GLN 127
N	PHE 3	GLN 127

There are 51 helices in PDB entry 9GAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	94	101	Right-handed alpha
Helix 4	AA4	A	105	131	Right-handed alpha
Helix 5	AA5	A	135	137	Right-handed 310
Helix 6	AA6	A	149	164	Right-handed alpha
Helix 7	AA7	A	181	191	Right-handed alpha
Helix 8	AA8	A	194	198	Right-handed 310
Helix 9	AA9	A	259	263	Right-handed 310
Helix 10	AB1	B	3	8	Right-handed alpha
Helix 11	AB2	B	94	101	Right-handed alpha
Helix 12	AB3	B	105	132	Right-handed alpha
Helix 13	AB4	B	150	152	Right-handed 310
Helix 14	AB5	B	153	168	Right-handed alpha
Helix 15	AB6	B	181	190	Right-handed alpha
Helix 16	AB7	B	259	263	Right-handed 310
Helix 17	AB8	D	3	8	Right-handed 310
Helix 18	AB9	D	94	101	Right-handed alpha
Helix 19	AC1	D	105	132	Right-handed alpha
Helix 20	AC2	D	150	152	Right-handed 310
Helix 21	AC3	D	153	168	Right-handed alpha
Helix 22	AC4	D	181	190	Right-handed alpha
Helix 23	AC5	D	259	263	Right-handed 310
Helix 24	AC6	F	3	8	Right-handed 310
Helix 25	AC7	F	94	101	Right-handed alpha
Helix 26	AC8	F	105	132	Right-handed alpha
Helix 27	AC9	F	150	152	Right-handed 310
Helix 28	AD1	F	153	168	Right-handed alpha
Helix 29	AD2	F	181	190	Right-handed alpha
Helix 30	AD3	F	194	198	Right-handed 310
Helix 31	AD4	F	259	263	Right-handed 310
Helix 32	AD5	G	4	8	Right-handed 310
Helix 33	AD6	G	94	101	Right-handed alpha
Helix 34	AD7	G	105	132	Right-handed alpha
Helix 35	AD8	G	150	152	Right-handed 310
Helix 36	AD9	G	153	168	Right-handed alpha
Helix 37	AE1	G	181	189	Right-handed alpha
Helix 38	AE2	G	279	281	Right-handed 310
Helix 39	AE3	H	3	8	Right-handed alpha
Helix 40	AE4	H	94	101	Right-handed alpha
Helix 41	AE5	H	105	132	Right-handed alpha
Helix 42	AE6	H	150	152	Right-handed 310
Helix 43	AE7	H	153	167	Right-handed alpha
Helix 44	AE8	H	181	190	Right-handed alpha
Helix 45	AE9	K	3	8	Right-handed 310
Helix 46	AF1	K	94	101	Right-handed alpha
Helix 47	AF2	K	105	132	Right-handed alpha
Helix 48	AF3	K	150	152	Right-handed 310
Helix 49	AF4	K	153	168	Right-handed alpha
Helix 50	AF5	K	181	189	Right-handed alpha
Helix 51	AF6	K	259	263	Right-handed 310

There are 51 sheets in PDB entry 9GAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	H	47	50	parallel
Strand 3	H	82	91	anti-parallel
Strand 4	G	61	62	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	H	47	50	parallel
Strand 3	H	82	91	anti-parallel
Strand 4	H	268	277	anti-parallel
Strand 5	H	244	255	anti-parallel
Strand 6	H	37	40	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	244	256	parallel
Strand 3	A	267	277	anti-parallel
Strand 4	A	85	91	anti-parallel
Strand 5	H	61	62	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	73	78	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	B	85	91	anti-parallel
Strand 3	B	268	277	anti-parallel
Strand 4	B	244	255	anti-parallel
Strand 5	B	37	40	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	283	287	parallel
Strand 3	A	233	237	anti-parallel
Strand 4	A	174	177	anti-parallel
Strand 5	A	208	211	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	F	18	19	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	73	78	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	174	177	parallel
Strand 3	B	234	237	anti-parallel
Strand 4	B	283	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	D	75	78	anti-parallel
Strand 3	D	52	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	I	69	72	anti-parallel
Strand 3	I	119	123	anti-parallel
Strand 4	I	104	111	anti-parallel
Strand 5	I	86	90	anti-parallel
Strand 6	I	95	97	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	60	64	anti-parallel
Strand 3	C	47	51	anti-parallel
Strand 4	C	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	86	90	anti-parallel
Strand 3	C	104	111	anti-parallel
Strand 4	C	119	123	anti-parallel
Strand 5	C	69	72	anti-parallel
Strand 6	M	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	244	255	parallel
Strand 3	D	268	277	anti-parallel
Strand 4	D	85	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	283	287	parallel
Strand 3	D	233	237	anti-parallel
Strand 4	D	174	177	anti-parallel
Strand 5	D	208	211	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	219	first strand
Strand 2	D	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	N	69	72	anti-parallel
Strand 3	N	119	123	anti-parallel
Strand 4	N	104	111	anti-parallel
Strand 5	N	86	90	anti-parallel
Strand 6	N	95	97	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	29	first strand
Strand 2	E	60	64	anti-parallel
Strand 3	E	47	51	anti-parallel
Strand 4	E	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	86	90	anti-parallel
Strand 3	E	104	111	anti-parallel
Strand 4	E	120	123	anti-parallel
Strand 5	E	69	71	anti-parallel
Strand 6	L	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	40	first strand
Strand 2	F	244	256	parallel
Strand 3	F	267	277	anti-parallel
Strand 4	F	85	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	57	first strand
Strand 2	F	73	78	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	K	85	91	anti-parallel
Strand 3	K	268	277	anti-parallel
Strand 4	K	244	255	anti-parallel
Strand 5	K	37	40	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	211	first strand
Strand 2	F	174	177	parallel
Strand 3	F	233	237	anti-parallel
Strand 4	F	283	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	219	first strand
Strand 2	F	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	19	first strand
Strand 2	K	47	50	parallel
Strand 3	K	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	40	first strand
Strand 2	G	244	255	parallel
Strand 3	G	268	277	anti-parallel
Strand 4	G	85	91	anti-parallel
Strand 5	K	61	62	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	83	first strand
Strand 2	G	47	50	anti-parallel
Strand 3	H	18	19	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	57	first strand
Strand 2	G	73	78	anti-parallel
Strand 3	I	11	14	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	283	286	parallel
Strand 3	G	234	237	anti-parallel
Strand 4	G	174	177	anti-parallel
Strand 5	G	208	211	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	219	first strand
Strand 2	G	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	57	first strand
Strand 2	H	73	78	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	283	287	parallel
Strand 3	H	233	237	anti-parallel
Strand 4	H	174	177	anti-parallel
Strand 5	H	208	211	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	215	219	first strand
Strand 2	H	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	M	69	72	anti-parallel
Strand 3	M	119	123	anti-parallel
Strand 4	M	104	111	anti-parallel
Strand 5	M	86	90	anti-parallel
Strand 6	M	95	97	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	29	first strand
Strand 2	I	60	64	anti-parallel
Strand 3	I	47	51	anti-parallel
Strand 4	I	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	29	first strand
Strand 2	J	60	64	anti-parallel
Strand 3	J	47	51	anti-parallel
Strand 4	J	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	69	72	first strand
Strand 2	J	119	123	anti-parallel
Strand 3	J	104	111	anti-parallel
Strand 4	J	86	90	anti-parallel
Strand 5	J	95	97	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	57	first strand
Strand 2	K	73	78	anti-parallel
Strand 3	L	11	14	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	139	140	first strand
Strand 2	K	283	287	parallel
Strand 3	K	233	237	anti-parallel
Strand 4	K	174	177	anti-parallel
Strand 5	K	208	211	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	194	195	first strand
Strand 2	K	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	215	219	first strand
Strand 2	K	222	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	29	first strand
Strand 2	L	60	64	anti-parallel
Strand 3	L	47	51	anti-parallel
Strand 4	L	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	97	first strand
Strand 2	L	86	90	anti-parallel
Strand 3	L	104	111	anti-parallel
Strand 4	L	120	123	anti-parallel
Strand 5	L	69	71	anti-parallel
Strand 6	N	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	25	29	first strand
Strand 2	M	60	64	anti-parallel
Strand 3	M	47	51	anti-parallel
Strand 4	M	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	25	29	first strand
Strand 2	N	60	64	anti-parallel
Strand 3	N	47	51	anti-parallel
Strand 4	N	40	44	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GAZ