Analysis of interatomic Contacts of Structural Units in PDB entry:
9GB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GB9 entry

There are 4 chains in PDB entry 9GB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 306	SER 599
B	ASP 306	SER 599
C	ASP 306	SER 599
D	ASP 306	SER 599

There are 61 helices in PDB entry 9GB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	312	320	Right-handed alpha
Helix 2	AA2	A	324	328	Right-handed 310
Helix 3	AA3	A	358	369	Right-handed alpha
Helix 4	AA4	A	398	405	Right-handed alpha
Helix 5	AA5	A	412	433	Right-handed alpha
Helix 6	AA6	A	444	446	Right-handed 310
Helix 7	AA7	A	464	469	Right-handed alpha
Helix 8	AA8	A	487	494	Right-handed alpha
Helix 9	AA9	A	497	515	Right-handed alpha
Helix 10	AB1	A	531	541	Right-handed alpha
Helix 11	AB2	A	545	553	Right-handed alpha
Helix 12	AB3	A	554	558	Right-handed 310
Helix 13	AB4	A	562	577	Right-handed alpha
Helix 14	AB5	A	580	584	Right-handed 310
Helix 15	AB6	A	586	597	Right-handed alpha
Helix 16	AB7	B	312	320	Right-handed alpha
Helix 17	AB8	B	324	328	Right-handed 310
Helix 18	AB9	B	357	369	Right-handed alpha
Helix 19	AC1	B	398	405	Right-handed alpha
Helix 20	AC2	B	412	433	Right-handed alpha
Helix 21	AC3	B	444	446	Right-handed 310
Helix 22	AC4	B	463	469	Right-handed alpha
Helix 23	AC5	B	487	494	Right-handed alpha
Helix 24	AC6	B	497	515	Right-handed alpha
Helix 25	AC7	B	532	541	Right-handed alpha
Helix 26	AC8	B	545	553	Right-handed alpha
Helix 27	AC9	B	554	558	Right-handed 310
Helix 28	AD1	B	562	577	Right-handed alpha
Helix 29	AD2	B	580	584	Right-handed 310
Helix 30	AD3	B	586	596	Right-handed alpha
Helix 31	AD4	C	306	308	Right-handed 310
Helix 32	AD5	C	312	320	Right-handed alpha
Helix 33	AD6	C	324	328	Right-handed 310
Helix 34	AD7	C	357	369	Right-handed alpha
Helix 35	AD8	C	398	405	Right-handed alpha
Helix 36	AD9	C	412	433	Right-handed alpha
Helix 37	AE1	C	444	446	Right-handed 310
Helix 38	AE2	C	464	469	Right-handed alpha
Helix 39	AE3	C	487	494	Right-handed alpha
Helix 40	AE4	C	497	515	Right-handed alpha
Helix 41	AE5	C	532	541	Right-handed alpha
Helix 42	AE6	C	545	553	Right-handed alpha
Helix 43	AE7	C	554	558	Right-handed 310
Helix 44	AE8	C	562	577	Right-handed alpha
Helix 45	AE9	C	580	584	Right-handed 310
Helix 46	AF1	C	586	596	Right-handed alpha
Helix 47	AF2	D	312	320	Right-handed alpha
Helix 48	AF3	D	324	328	Right-handed 310
Helix 49	AF4	D	359	370	Right-handed alpha
Helix 50	AF5	D	398	405	Right-handed alpha
Helix 51	AF6	D	412	433	Right-handed alpha
Helix 52	AF7	D	444	446	Right-handed 310
Helix 53	AF8	D	463	468	Right-handed alpha
Helix 54	AF9	D	487	494	Right-handed alpha
Helix 55	AG1	D	497	515	Right-handed alpha
Helix 56	AG2	D	531	541	Right-handed alpha
Helix 57	AG3	D	545	553	Right-handed alpha
Helix 58	AG4	D	554	558	Right-handed 310
Helix 59	AG5	D	562	577	Right-handed alpha
Helix 60	AG6	D	580	584	Right-handed 310
Helix 61	AG7	D	586	598	Right-handed alpha

There are 10 sheets in PDB entry 9GB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	342	first strand
Strand 2	A	345	352	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	378	383	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	456	458	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	B	388	392	anti-parallel
Strand 4	B	378	382	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	456	458	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	B	530	531	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	378	382	parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	345	352	anti-parallel
Strand 5	C	337	342	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	456	458	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	520	first strand
Strand 2	C	530	531	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	345	351	anti-parallel
Strand 3	D	388	392	anti-parallel
Strand 4	D	378	382	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	450	first strand
Strand 2	D	456	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GB9