Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GBC entry

There are 2 chains in PDB entry 9GBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 118GLY 795
B
 VAL 38PHE 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9GBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 125Right-handed alpha
Helix 2
AA2
A
136 139Right-handed 310
Helix 3
AA3
A
144 150Right-handed alpha
Helix 4
AA4
A
201 205Right-handed 310
Helix 5
AA5
A
561 567Right-handed alpha
Helix 6
AA6
A
570 575Right-handed alpha
Helix 7
AA7
A
732 736Right-handed 310
Helix 8
AA8
B
94 99Right-handed alpha
Helix 9
AA9
B
108 112Right-handed 310
Helix 10
AB1
B
188 193Right-handed 310
Helix 11
AB2
B
223 227Right-handed alpha
Helix 12
AB3
B
284 286Right-handed 310
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There are 18 sheets in PDB entry 9GBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
179 183parallel
Strand 5
A
186 187anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
167 171anti-parallel
Strand 3
A
174 175anti-parallel
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There are 23 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 247first strand
Strand 2
A
253 262anti-parallel
Strand 3
A
267 278anti-parallel
Strand 4
A
314 326anti-parallel
Strand 5
A
333 346anti-parallel
Strand 6
A
361 376anti-parallel
Strand 7
A
384 400anti-parallel
Strand 8
A
425 444anti-parallel
Strand 9
A
448 460anti-parallel
Strand 10
A
478 490anti-parallel
Strand 11
A
496 514anti-parallel
Strand 12
A
523 542anti-parallel
Strand 13
A
547 558anti-parallel
Strand 14
A
581 596anti-parallel
Strand 15
A
599 613anti-parallel
Strand 16
A
636 650anti-parallel
Strand 17
A
654 667anti-parallel
Strand 18
A
691 702anti-parallel
Strand 19
A
710 720anti-parallel
Strand 20
A
742 753anti-parallel
Strand 21
A
758 765anti-parallel
Strand 22
A
784 794anti-parallel
Strand 23
A
239 247anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
305 308anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
297 300anti-parallel
Strand 3
B
435 436anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
412 414anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
631 633anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 724first strand
Strand 2
A
738 739anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
39 48anti-parallel
Strand 3
B
60 61anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
39 48anti-parallel
Strand 3
B
451 460anti-parallel
Strand 4
B
444 448anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 80first strand
Strand 2
B
83 90anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
B
152 156anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
169 171anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
182 186anti-parallel
Strand 3
B
205 209anti-parallel
Strand 4
B
216 222anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 239first strand
Strand 2
B
242 247anti-parallel
Strand 3
B
261 266anti-parallel
Strand 4
B
275 278anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
301 308anti-parallel
Strand 3
B
296 298anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
301 308anti-parallel
Strand 3
B
319 324anti-parallel
Strand 4
B
329 336anti-parallel
Strand 5
B
381 382parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 349first strand
Strand 2
B
352 363anti-parallel
Strand 3
B
366 374anti-parallel
Strand 4
B
390 392anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 401first strand
Strand 2
B
405 409anti-parallel
Strand 3
B
420 424anti-parallel
Strand 4
B
430 432anti-parallel
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