Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GBG entry

There is 1 chain in PDB entry 9GBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6MET 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9GBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
67 82Right-handed alpha
Helix 4
AA4
A
97 104Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
118 136Right-handed alpha
Helix 7
AA7
A
174 193Right-handed alpha
Helix 8
AA8
A
278 286Right-handed alpha
Helix 9
AA9
A
306 312Right-handed alpha
Helix 10
AB1
A
312 317Right-handed alpha
Helix 11
AB2
A
318 332Right-handed alpha
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There are 3 sheets in PDB entry 9GBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
51 52anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
86 91parallel
Strand 3
A
144 149parallel
Strand 4
A
196 201parallel
Strand 5
A
56 61parallel
Strand 6
A
227 233parallel
Strand 7
A
246 253anti-parallel
Strand 8
A
262 268anti-parallel
Strand 9
A
272 273anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
303 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il