Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GBU entry

There are 2 chains in PDB entry 9GBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 479
B
 SER 2SER 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9GBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
70 76Right-handed alpha
Helix 5
AA5
A
87 95Right-handed alpha
Helix 6
AA6
A
108 119Right-handed 310
Helix 7
AA7
A
126 138Right-handed alpha
Helix 8
AA8
A
144 165Right-handed alpha
Helix 9
AA9
A
179 190Right-handed alpha
Helix 10
AB1
A
191 197Right-handed 310
Helix 11
AB2
A
202 212Right-handed alpha
Helix 12
AB3
A
213 220Right-handed alpha
Helix 13
AB4
A
222 224Right-handed 310
Helix 14
AB5
A
235 242Right-handed alpha
Helix 15
AB6
A
260 270Right-handed alpha
Helix 16
AB7
A
273 277Right-handed 310
Helix 17
AB8
A
290 295Right-handed alpha
Helix 18
AB9
A
296 298Right-handed 310
Helix 19
AC1
A
300 316Right-handed alpha
Helix 20
AC2
A
324 328Right-handed 310
Helix 21
AC3
A
355 365Right-handed alpha
Helix 22
AC4
A
381 385Right-handed 310
Helix 23
AC5
A
397 413Right-handed alpha
Helix 24
AC6
A
418 421Right-handed 310
Helix 25
AC7
A
422 432Right-handed alpha
Helix 26
AC8
A
438 446Right-handed alpha
Helix 27
AC9
A
453 461Right-handed alpha
Helix 28
AD1
A
470 474Right-handed 310
Helix 29
AD2
B
21 25Right-handed 310
Helix 30
AD3
B
39 45Right-handed alpha
Helix 31
AD4
B
62 66Right-handed 310
Helix 32
AD5
B
70 76Right-handed alpha
Helix 33
AD6
B
87 97Right-handed alpha
Helix 34
AD7
B
108 119Right-handed 310
Helix 35
AD8
B
126 138Right-handed alpha
Helix 36
AD9
B
144 165Right-handed alpha
Helix 37
AE1
B
179 190Right-handed alpha
Helix 38
AE2
B
191 197Right-handed 310
Helix 39
AE3
B
202 212Right-handed alpha
Helix 40
AE4
B
213 220Right-handed alpha
Helix 41
AE5
B
222 224Right-handed 310
Helix 42
AE6
B
235 242Right-handed alpha
Helix 43
AE7
B
260 270Right-handed alpha
Helix 44
AE8
B
273 277Right-handed 310
Helix 45
AE9
B
290 295Right-handed alpha
Helix 46
AF1
B
296 298Right-handed 310
Helix 47
AF2
B
300 316Right-handed alpha
Helix 48
AF3
B
324 328Right-handed 310
Helix 49
AF4
B
355 365Right-handed alpha
Helix 50
AF5
B
381 385Right-handed 310
Helix 51
AF6
B
399 412Right-handed alpha
Helix 52
AF7
B
418 421Right-handed 310
Helix 53
AF8
B
422 432Right-handed alpha
Helix 54
AF9
B
438 446Right-handed alpha
Helix 55
AG1
B
453 462Right-handed alpha
Helix 56
AG2
B
469 474Right-handed 310
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There are 8 sheets in PDB entry 9GBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
81 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
101 106parallel
Strand 3
A
226 232parallel
Strand 4
A
256 259parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
372 376parallel
Strand 3
A
343 351parallel
Strand 4
A
333 340anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
9 12anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
81 83anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
101 106parallel
Strand 3
B
226 232parallel
Strand 4
B
256 259parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
372 376parallel
Strand 3
B
343 351parallel
Strand 4
B
333 340anti-parallel
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