Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GBV entry

There are 6 chains in PDB entry 9GBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	GLU 841
C	ARG 6	GLU 841
B	SER 9	ASN 806
D	SER 9	ASN 806
E	T -37	T 121
F	A -78	A 80

There are112 helices in PDB entry 9GBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	42	55	Right-handed alpha
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	82	92	Right-handed alpha
Helix 5	AA5	A	129	134	Right-handed 310
Helix 6	AA6	A	164	170	Right-handed alpha
Helix 7	AA7	A	186	201	Right-handed alpha
Helix 8	AA8	A	204	210	Right-handed alpha
Helix 9	AA9	A	228	236	Right-handed alpha
Helix 10	AB1	A	269	283	Right-handed alpha
Helix 11	AB2	A	312	324	Right-handed alpha
Helix 12	AB3	A	346	387	Right-handed alpha
Helix 13	AB4	A	389	399	Right-handed alpha
Helix 14	AB5	A	402	411	Right-handed alpha
Helix 15	AB6	A	420	426	Right-handed alpha
Helix 16	AB7	A	428	432	Right-handed 310
Helix 17	AB8	A	451	460	Right-handed alpha
Helix 18	AB9	A	462	466	Right-handed 310
Helix 19	AC1	A	467	494	Right-handed alpha
Helix 20	AC2	A	494	514	Right-handed alpha
Helix 21	AC3	A	555	557	Right-handed 310
Helix 22	AC4	A	605	607	Right-handed 310
Helix 23	AC5	A	618	622	Right-handed 310
Helix 24	AC6	A	661	664	Right-handed 310
Helix 25	AC7	A	709	711	Right-handed 310
Helix 26	AC8	A	757	761	Right-handed 310
Helix 27	AC9	C	13	32	Right-handed alpha
Helix 28	AD1	C	42	55	Right-handed alpha
Helix 29	AD2	C	66	77	Right-handed alpha
Helix 30	AD3	C	81	92	Right-handed alpha
Helix 31	AD4	C	129	136	Right-handed 310
Helix 32	AD5	C	164	170	Right-handed alpha
Helix 33	AD6	C	186	201	Right-handed alpha
Helix 34	AD7	C	204	209	Right-handed alpha
Helix 35	AD8	C	228	235	Right-handed alpha
Helix 36	AD9	C	269	283	Right-handed alpha
Helix 37	AE1	C	312	324	Right-handed alpha
Helix 38	AE2	C	346	387	Right-handed alpha
Helix 39	AE3	C	389	400	Right-handed alpha
Helix 40	AE4	C	402	411	Right-handed alpha
Helix 41	AE5	C	420	426	Right-handed alpha
Helix 42	AE6	C	451	460	Right-handed alpha
Helix 43	AE7	C	462	466	Right-handed 310
Helix 44	AE8	C	467	493	Right-handed alpha
Helix 45	AE9	C	494	514	Right-handed alpha
Helix 46	AF1	C	555	557	Right-handed 310
Helix 47	AF2	C	605	607	Right-handed 310
Helix 48	AF3	C	620	622	Right-handed 310
Helix 49	AF4	C	661	664	Right-handed 310
Helix 50	AF5	B	10	22	Right-handed alpha
Helix 51	AF6	B	23	26	Right-handed 310
Helix 52	AF7	B	34	51	Right-handed alpha
Helix 53	AF8	B	52	54	Right-handed 310
Helix 54	AF9	B	89	96	Right-handed alpha
Helix 55	AG1	B	120	126	Right-handed alpha
Helix 56	AG2	B	184	198	Right-handed alpha
Helix 57	AG3	B	220	230	Right-handed alpha
Helix 58	AG4	B	279	300	Right-handed alpha
Helix 59	AG5	B	301	306	Right-handed alpha
Helix 60	AG6	B	311	316	Right-handed alpha
Helix 61	AG7	B	343	364	Right-handed alpha
Helix 62	AG8	B	364	384	Right-handed alpha
Helix 63	AG9	B	414	418	Right-handed 310
Helix 64	AH1	B	425	434	Right-handed alpha
Helix 65	AH2	B	457	464	Right-handed alpha
Helix 66	AH3	B	465	475	Right-handed alpha
Helix 67	AH4	B	500	518	Right-handed alpha
Helix 68	AH5	B	518	525	Right-handed alpha
Helix 69	AH6	B	548	562	Right-handed alpha
Helix 70	AH7	B	576	597	Right-handed alpha
Helix 71	AH8	B	602	609	Right-handed alpha
Helix 72	AH9	B	616	620	Right-handed 310
Helix 73	AI1	B	624	640	Right-handed alpha
Helix 74	AI2	B	678	683	Right-handed alpha
Helix 75	AI3	B	684	698	Right-handed alpha
Helix 76	AI4	B	718	731	Right-handed alpha
Helix 77	AI5	B	741	745	Right-handed 310
Helix 78	AI6	B	746	755	Right-handed alpha
Helix 79	AI7	B	769	782	Right-handed alpha
Helix 80	AI8	B	785	797	Right-handed alpha
Helix 81	AI9	D	10	22	Right-handed alpha
Helix 82	AJ1	D	23	26	Right-handed 310
Helix 83	AJ2	D	34	51	Right-handed alpha
Helix 84	AJ3	D	52	54	Right-handed 310
Helix 85	AJ4	D	89	97	Right-handed alpha
Helix 86	AJ5	D	120	126	Right-handed alpha
Helix 87	AJ6	D	184	198	Right-handed alpha
Helix 88	AJ7	D	221	230	Right-handed alpha
Helix 89	AJ8	D	279	300	Right-handed alpha
Helix 90	AJ9	D	301	306	Right-handed alpha
Helix 91	AK1	D	311	316	Right-handed alpha
Helix 92	AK2	D	345	364	Right-handed alpha
Helix 93	AK3	D	364	384	Right-handed alpha
Helix 94	AK4	D	414	418	Right-handed 310
Helix 95	AK5	D	425	434	Right-handed alpha
Helix 96	AK6	D	457	464	Right-handed alpha
Helix 97	AK7	D	465	475	Right-handed alpha
Helix 98	AK8	D	484	488	Right-handed 310
Helix 99	AK9	D	500	518	Right-handed alpha
Helix 100	AL1	D	518	525	Right-handed alpha
Helix 101	AL2	D	548	561	Right-handed alpha
Helix 102	AL3	D	576	596	Right-handed alpha
Helix 103	AL4	D	602	609	Right-handed alpha
Helix 104	AL5	D	610	612	Right-handed 310
Helix 105	AL6	D	625	640	Right-handed alpha
Helix 106	AL7	D	678	684	Right-handed alpha
Helix 107	AL8	D	684	698	Right-handed alpha
Helix 108	AL9	D	718	731	Right-handed alpha
Helix 109	AM1	D	741	745	Right-handed 310
Helix 110	AM2	D	746	755	Right-handed alpha
Helix 111	AM3	D	769	782	Right-handed alpha
Helix 112	AM4	D	785	796	Right-handed alpha

There are 41 sheets in PDB entry 9GBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	B	762	766	parallel
Strand 3	B	527	529	anti-parallel
Strand 4	B	493	495	parallel
Strand 5	B	419	423	parallel
Strand 6	B	441	445	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	179	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	333	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	222	224	anti-parallel
Strand 4	A	520	521	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	341	344	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	447	449	anti-parallel
Strand 3	A	442	443	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	538	544	anti-parallel
Strand 3	A	578	585	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	603	first strand
Strand 2	A	589	593	anti-parallel
Strand 3	A	633	637	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	688	first strand
Strand 2	A	645	650	anti-parallel
Strand 3	A	654	659	anti-parallel
Strand 4	A	721	722	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	736	first strand
Strand 2	A	693	698	anti-parallel
Strand 3	A	702	707	anti-parallel
Strand 4	A	771	772	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	756	first strand
Strand 2	A	743	748	anti-parallel
Strand 3	A	783	789	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	753	first strand
Strand 2	A	822	823	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	808	first strand
Strand 2	A	794	799	anti-parallel
Strand 3	A	833	839	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	D	762	766	parallel
Strand 3	D	527	530	anti-parallel
Strand 4	D	493	495	parallel
Strand 5	D	419	423	parallel
Strand 6	D	441	445	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	103	106	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	179	182	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	333	first strand
Strand 2	C	237	243	anti-parallel
Strand 3	C	222	224	anti-parallel
Strand 4	C	520	521	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	341	344	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	447	449	anti-parallel
Strand 3	C	442	443	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	585	first strand
Strand 2	C	538	544	anti-parallel
Strand 3	C	548	553	anti-parallel
Strand 4	C	617	618	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	603	first strand
Strand 2	C	589	593	anti-parallel
Strand 3	C	633	637	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	688	first strand
Strand 2	C	645	650	anti-parallel
Strand 3	C	654	659	anti-parallel
Strand 4	C	721	722	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	693	697	anti-parallel
Strand 3	C	702	707	anti-parallel
Strand 4	C	771	772	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	788	first strand
Strand 2	C	743	748	anti-parallel
Strand 3	C	752	757	anti-parallel
Strand 4	C	822	823	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	808	first strand
Strand 2	C	794	799	anti-parallel
Strand 3	C	833	839	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	139	146	anti-parallel
Strand 3	B	155	159	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	139	146	anti-parallel
Strand 3	B	127	136	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	69	72	anti-parallel
Strand 6	B	58	63	anti-parallel
Strand 7	B	202	207	parallel
Strand 8	B	212	216	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	247	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	264	270	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	734	738	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	705	709	anti-parallel
Strand 3	B	712	716	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	653	first strand
Strand 2	B	660	668	anti-parallel
Strand 3	B	671	676	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	155	158	anti-parallel

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There are 8 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	127	136	anti-parallel
Strand 4	D	164	171	anti-parallel
Strand 5	D	69	73	anti-parallel
Strand 6	D	58	63	anti-parallel
Strand 7	D	202	207	parallel
Strand 8	D	212	216	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	246	first strand
Strand 2	D	251	258	anti-parallel
Strand 3	D	319	326	anti-parallel
Strand 4	D	264	270	parallel
Strand 5	D	273	275	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	734	738	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	706	709	anti-parallel
Strand 3	D	712	715	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	653	first strand
Strand 2	D	660	668	anti-parallel
Strand 3	D	671	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBV