Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GBW entry

There are 14 chains in PDB entry 9GBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	LYS 132
C	GLU 10	LYS 164
D	LEU 171	LYS 391
E	ARG 4	ASP 43
G	A 1	U 11
h	LYS 2	ASP 82
j	ILE 3	LEU 83
k	SER 6	GLY 91
l	MET 14	VAL 90
m	SER 2	VAL 75
n	ALA 4	VAL 76
F	MET 1	GLU 258
i	MET 11	LEU 114
R	A 1	U 133

There are 40 helices in PDB entry 9GBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	13	Right-handed alpha
Helix 2	AA2	B	14	18	Right-handed 310
Helix 3	AA3	B	25	37	Right-handed alpha
Helix 4	AA4	B	62	82	Right-handed alpha
Helix 5	AA5	B	88	96	Right-handed alpha
Helix 6	AA6	C	14	18	Right-handed 310
Helix 7	AA7	C	29	37	Right-handed alpha
Helix 8	AA8	C	63	73	Right-handed alpha
Helix 9	AA9	C	103	111	Right-handed alpha
Helix 10	AB1	C	137	141	Right-handed 310
Helix 11	AB2	D	172	198	Right-handed alpha
Helix 12	AB3	D	201	224	Right-handed alpha
Helix 13	AB4	D	225	229	Right-handed 310
Helix 14	AB5	D	233	336	Right-handed alpha
Helix 15	AB6	D	340	391	Right-handed alpha
Helix 16	AB7	E	17	25	Right-handed alpha
Helix 17	AB8	E	27	41	Right-handed alpha
Helix 18	AB9	h	3	8	Right-handed alpha
Helix 19	AC1	h	75	82	Right-handed alpha
Helix 20	AC2	j	4	13	Right-handed alpha
Helix 21	AC3	j	74	80	Right-handed 310
Helix 22	AC4	k	7	11	Right-handed alpha
Helix 23	AC5	l	16	28	Right-handed alpha
Helix 24	AC6	l	80	82	Right-handed 310
Helix 25	AC7	m	6	15	Right-handed alpha
Helix 26	AC8	n	21	25	Right-handed 310
Helix 27	AC9	n	63	67	Right-handed 310
Helix 28	AD1	F	7	32	Right-handed alpha
Helix 29	AD2	F	70	83	Right-handed alpha
Helix 30	AD3	F	86	93	Right-handed alpha
Helix 31	AD4	F	95	101	Right-handed 310
Helix 32	AD5	F	111	130	Right-handed alpha
Helix 33	AD6	F	131	137	Right-handed alpha
Helix 34	AD7	F	148	156	Right-handed alpha
Helix 35	AD8	F	157	178	Right-handed alpha
Helix 36	AD9	F	230	235	Right-handed alpha
Helix 37	AE1	F	236	257	Right-handed alpha
Helix 38	AE2	i	14	18	Right-handed 310
Helix 39	AE3	i	19	27	Right-handed alpha
Helix 40	AE4	i	29	39	Right-handed alpha

There are 12 sheets in PDB entry 9GBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	122	126	parallel
Strand 4	B	97	99	anti-parallel
Strand 5	B	104	105	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	91	98	anti-parallel
Strand 3	C	52	56	anti-parallel
Strand 4	C	123	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	12	14	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	39	40	first strand
Strand 2	h	24	31	anti-parallel
Strand 3	h	43	46	anti-parallel
Strand 4	h	53	55	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	39	40	first strand
Strand 2	h	24	31	anti-parallel
Strand 3	h	14	19	anti-parallel
Strand 4	h	65	70	anti-parallel
Strand 5	i	90	101	anti-parallel
Strand 6	i	65	76	anti-parallel
Strand 7	i	51	59	anti-parallel
Strand 8	i	42	46	anti-parallel
Strand 9	i	106	111	anti-parallel
Strand 10	m	54	64	anti-parallel
Strand 11	m	42	51	anti-parallel
Strand 12	m	28	36	anti-parallel
Strand 13	m	18	23	anti-parallel
Strand 14	m	69	74	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	59	60	first strand
Strand 2	k	77	82	anti-parallel
Strand 3	k	16	21	anti-parallel
Strand 4	k	26	31	anti-parallel
Strand 5	k	40	50	anti-parallel
Strand 6	k	62	72	anti-parallel
Strand 7	j	68	72	anti-parallel
Strand 8	j	19	22	anti-parallel
Strand 9	j	27	28	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	31	35	first strand
Strand 2	j	41	44	anti-parallel
Strand 3	j	61	63	anti-parallel
Strand 4	n	69	72	anti-parallel
Strand 5	n	16	20	anti-parallel
Strand 6	n	28	30	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	48	49	first strand
Strand 2	j	55	56	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	73	78	first strand
Strand 2	l	57	65	anti-parallel
Strand 3	l	41	49	anti-parallel
Strand 4	l	30	35	anti-parallel
Strand 5	l	84	88	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	40	42	first strand
Strand 2	n	60	62	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	53	55	first strand
Strand 2	F	107	109	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	F	65	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GBW