Analysis of interatomic Contacts of Structural Units in PDB entry:
9GC3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GC3 entry

There are 5 chains in PDB entry 9GC3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 668
B	SER 137	SER 672
C	MET 1	MET 588
D	G 46	T 85
E	A 1	C 40

There are 57 helices in PDB entry 9GC3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	27	35	Right-handed alpha
Helix 3	AA3	A	42	55	Right-handed alpha
Helix 4	AA4	A	71	78	Right-handed alpha
Helix 5	AA5	A	88	98	Right-handed alpha
Helix 6	AA6	A	107	121	Right-handed alpha
Helix 7	AA7	A	122	124	Right-handed 310
Helix 8	AA8	A	127	135	Right-handed alpha
Helix 9	AA9	A	137	147	Right-handed alpha
Helix 10	AB1	A	148	150	Right-handed 310
Helix 11	AB2	A	171	173	Right-handed 310
Helix 12	AB3	A	184	187	Right-handed 310
Helix 13	AB4	A	188	199	Right-handed alpha
Helix 14	AB5	A	206	213	Right-handed alpha
Helix 15	AB6	A	214	217	Right-handed 310
Helix 16	AB7	A	218	235	Right-handed alpha
Helix 17	AB8	A	333	345	Right-handed alpha
Helix 18	AB9	A	346	349	Right-handed 310
Helix 19	AC1	A	352	360	Right-handed alpha
Helix 20	AC2	A	361	363	Right-handed 310
Helix 21	AC3	A	364	373	Right-handed alpha
Helix 22	AC4	A	409	417	Right-handed alpha
Helix 23	AC5	A	437	445	Right-handed alpha
Helix 24	AC6	A	541	545	Right-handed 310
Helix 25	AC7	A	549	566	Right-handed alpha
Helix 26	AC8	A	573	584	Right-handed alpha
Helix 27	AC9	A	591	605	Right-handed alpha
Helix 28	AD1	A	627	639	Right-handed alpha
Helix 29	AD2	A	659	668	Right-handed alpha
Helix 30	AD3	B	148	154	Right-handed alpha
Helix 31	AD4	B	159	163	Right-handed 310
Helix 32	AD5	B	165	175	Right-handed alpha
Helix 33	AD6	B	177	192	Right-handed alpha
Helix 34	AD7	B	199	204	Right-handed 310
Helix 35	AD8	B	215	219	Right-handed 310
Helix 36	AD9	B	222	227	Right-handed alpha
Helix 37	AE1	B	239	247	Right-handed alpha
Helix 38	AE2	B	326	330	Right-handed 310
Helix 39	AE3	B	498	503	Right-handed alpha
Helix 40	AE4	B	521	523	Right-handed 310
Helix 41	AE5	B	583	585	Right-handed 310
Helix 42	AE6	B	592	597	Right-handed alpha
Helix 43	AE7	C	51	54	Right-handed 310
Helix 44	AE8	C	126	131	Right-handed alpha
Helix 45	AE9	C	306	322	Right-handed alpha
Helix 46	AF1	C	323	326	Right-handed 310
Helix 47	AF2	C	360	363	Right-handed 310
Helix 48	AF3	C	385	394	Right-handed alpha
Helix 49	AF4	C	411	416	Right-handed 310
Helix 50	AF5	C	422	432	Right-handed alpha
Helix 51	AF6	C	433	446	Right-handed alpha
Helix 52	AF7	C	451	464	Right-handed alpha
Helix 53	AF8	C	465	469	Right-handed 310
Helix 54	AF9	C	471	486	Right-handed alpha
Helix 55	AG1	C	510	514	Right-handed 310
Helix 56	AG2	C	555	558	Right-handed 310
Helix 57	AG3	C	564	574	Right-handed alpha

There are 25 sheets in PDB entry 9GC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	66	67	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	152	159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	252	258	anti-parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	648	650	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	401	408	anti-parallel
Strand 3	A	391	398	anti-parallel
Strand 4	A	376	378	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	463	467	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	619	622	anti-parallel
Strand 3	A	609	612	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	C	65	67	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	407	413	anti-parallel
Strand 3	B	353	361	parallel
Strand 4	B	339	347	anti-parallel
Strand 5	B	310	318	anti-parallel
Strand 6	B	291	298	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	254	258	anti-parallel
Strand 3	B	613	617	parallel
Strand 4	B	598	608	anti-parallel
Strand 5	B	576	581	anti-parallel
Strand 6	B	567	572	anti-parallel
Strand 7	B	556	560	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	254	258	anti-parallel
Strand 3	B	613	617	parallel
Strand 4	B	598	608	anti-parallel
Strand 5	B	621	624	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	665	670	anti-parallel
Strand 4	B	656	661	anti-parallel
Strand 5	B	642	647	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	371	first strand
Strand 2	B	380	388	anti-parallel
Strand 3	B	393	399	anti-parallel
Strand 4	B	416	418	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	430	first strand
Strand 2	B	435	440	anti-parallel
Strand 3	B	444	449	anti-parallel
Strand 4	B	458	461	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	473	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	490	494	anti-parallel
Strand 4	B	504	508	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	525	529	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	551	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	365	372	anti-parallel
Strand 3	C	344	353	anti-parallel
Strand 4	C	329	338	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	29	31	anti-parallel
Strand 3	C	37	42	anti-parallel
Strand 4	C	56	61	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	100	104	anti-parallel
Strand 3	C	109	113	anti-parallel
Strand 4	C	116	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	143	148	anti-parallel
Strand 3	C	152	160	anti-parallel
Strand 4	C	166	175	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	246	251	anti-parallel
Strand 4	C	257	261	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	280	284	anti-parallel
Strand 3	C	289	293	anti-parallel
Strand 4	C	299	302	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	499	first strand
Strand 2	C	504	508	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	526	528	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	553	first strand
Strand 2	C	542	544	anti-parallel
Strand 3	C	586	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GC3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GC3