Analysis of interatomic Contacts of Structural Units in PDB entry:
9GCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GCI entry

There are 2 chains in PDB entry 9GCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -6SER 453
B
 SER 2SER 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9GCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
30 37Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
53 69Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
91 108Right-handed alpha
Helix 7
AA7
A
122 127Right-handed alpha
Helix 8
AA8
A
128 134Right-handed 310
Helix 9
AA9
A
135 152Right-handed alpha
Helix 10
AB1
A
163 173Right-handed alpha
Helix 11
AB2
A
183 208Right-handed alpha
Helix 12
AB3
A
226 230Right-handed alpha
Helix 13
AB4
A
235 250Right-handed alpha
Helix 14
AB5
A
250 260Right-handed alpha
Helix 15
AB6
A
263 273Right-handed alpha
Helix 16
AB7
A
277 292Right-handed alpha
Helix 17
AB8
A
337 352Right-handed alpha
Helix 18
AB9
A
378 398Right-handed alpha
Helix 19
AC1
A
415 422Right-handed 310
Helix 20
AC2
A
439 452Right-handed alpha
Helix 21
AC3
B
14 19Right-handed alpha
Helix 22
AC4
B
30 37Right-handed alpha
Helix 23
AC5
B
42 46Right-handed 310
Helix 24
AC6
B
53 69Right-handed alpha
Helix 25
AC7
B
78 83Right-handed alpha
Helix 26
AC8
B
91 108Right-handed alpha
Helix 27
AC9
B
122 127Right-handed alpha
Helix 28
AD1
B
128 134Right-handed 310
Helix 29
AD2
B
135 152Right-handed alpha
Helix 30
AD3
B
163 173Right-handed alpha
Helix 31
AD4
B
183 208Right-handed alpha
Helix 32
AD5
B
226 230Right-handed alpha
Helix 33
AD6
B
235 250Right-handed alpha
Helix 34
AD7
B
250 260Right-handed alpha
Helix 35
AD8
B
263 273Right-handed alpha
Helix 36
AD9
B
277 292Right-handed alpha
Helix 37
AE1
B
337 352Right-handed alpha
Helix 38
AE2
B
378 398Right-handed alpha
Helix 39
AE3
B
415 422Right-handed 310
Helix 40
AE4
B
439 452Right-handed alpha
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There are 6 sheets in PDB entry 9GCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
72 76parallel
Strand 3
A
111 117parallel
Strand 4
A
157 162parallel
Strand 5
A
213 219parallel
Strand 6
A
297 301parallel
Strand 7
A
357 362parallel
Strand 8
A
402 408parallel
Strand 9
A
8 12parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
306 310parallel
Strand 3
A
320 323anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
436 438anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
72 76parallel
Strand 3
B
111 117parallel
Strand 4
B
157 162parallel
Strand 5
B
213 219parallel
Strand 6
B
297 301parallel
Strand 7
B
357 362parallel
Strand 8
B
402 408parallel
Strand 9
B
8 12parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
306 310parallel
Strand 3
B
320 323anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 429first strand
Strand 2
B
436 438anti-parallel
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