Analysis of interatomic Contacts of Structural Units in PDB entry:
9GCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GCM entry

There are 4 chains in PDB entry 9GCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 U 11 A 81
B
 MET 1LYS 128
C
 GLU 10LYS 164
D
 GLU 291GLU 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9GCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 13Right-handed alpha
Helix 2
AA2
B
14 18Right-handed 310
Helix 3
AA3
B
25 37Right-handed alpha
Helix 4
AA4
B
62 82Right-handed alpha
Helix 5
AA5
B
88 95Right-handed alpha
Helix 6
AA6
C
12 17Right-handed alpha
Helix 7
AA7
C
28 37Right-handed alpha
Helix 8
AA8
C
48 50Right-handed 310
Helix 9
AA9
C
63 72Right-handed alpha
Helix 10
AB1
C
73 75Right-handed 310
Helix 11
AB2
C
101 113Right-handed alpha
Helix 12
AB3
C
148 151Right-handed 310
Helix 13
AB4
D
292 332Right-handed alpha
Helix 14
AB5
D
332 337Right-handed alpha
Helix 15
AB6
D
340 384Right-handed alpha
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There are 4 sheets in PDB entry 9GCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 58first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
121 127parallel
Strand 4
B
96 100anti-parallel
Strand 5
B
103 104anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 84first strand
Strand 2
C
91 99anti-parallel
Strand 3
C
52 56anti-parallel
Strand 4
C
123 124anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
120 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
152 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il