Analysis of interatomic Contacts of Structural Units in PDB entry:
9GCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GCO entry

There are 6 chains in PDB entry 9GCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 8ILE 115
B
 GLY 9TYR 138
C
 ASP 3ASP 136
D
 ILE 8ILE 115
E
 ASP 10LYS 140
F
 ASP 3CYS 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9GCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 18Right-handed 310
Helix 2
AA2
A
40 57Right-handed alpha
Helix 3
AA3
A
72 78Right-handed alpha
Helix 4
AA4
A
103 115Right-handed alpha
Helix 5
AA5
B
21 29Right-handed alpha
Helix 6
AA6
B
38 45Right-handed alpha
Helix 7
AA7
B
59 62Right-handed 310
Helix 8
AA8
B
63 68Right-handed alpha
Helix 9
AA9
B
88 93Right-handed alpha
Helix 10
AB1
B
94 96Right-handed 310
Helix 11
AB2
B
98 101Right-handed 310
Helix 12
AB3
B
111 113Right-handed 310
Helix 13
AB4
C
50 62Right-handed alpha
Helix 14
AB5
C
69 73Right-handed 310
Helix 15
AB6
C
79 87Right-handed alpha
Helix 16
AB7
C
101 103Right-handed 310
Helix 17
AB8
C
119 134Right-handed alpha
Helix 18
AB9
D
16 18Right-handed 310
Helix 19
AC1
D
40 57Right-handed alpha
Helix 20
AC2
D
72 78Right-handed alpha
Helix 21
AC3
D
103 115Right-handed alpha
Helix 22
AC4
E
21 29Right-handed alpha
Helix 23
AC5
E
38 45Right-handed alpha
Helix 24
AC6
E
59 62Right-handed 310
Helix 25
AC7
E
63 68Right-handed alpha
Helix 26
AC8
E
88 93Right-handed alpha
Helix 27
AC9
E
94 96Right-handed 310
Helix 28
AD1
E
98 101Right-handed 310
Helix 29
AD2
E
111 113Right-handed 310
Helix 30
AD3
E
134 139Right-handed alpha
Helix 31
AD4
F
50 62Right-handed alpha
Helix 32
AD5
F
69 73Right-handed 310
Helix 33
AD6
F
79 86Right-handed alpha
Helix 34
AD7
F
101 103Right-handed 310
Helix 35
AD8
F
119 134Right-handed alpha
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There are 12 sheets in PDB entry 9GCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
62 67parallel
Strand 3
A
30 36parallel
Strand 4
A
85 90anti-parallel
Strand 5
A
93 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
24 25anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
B
131 133anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
75 82anti-parallel
Strand 5
B
12 18anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
103 107anti-parallel
Strand 3
B
86 87anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 48first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
16 27anti-parallel
Strand 4
C
4 13anti-parallel
Strand 5
C
66 67anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
90 93anti-parallel
Strand 3
C
105 107anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
62 67parallel
Strand 3
D
30 36parallel
Strand 4
D
85 90anti-parallel
Strand 5
D
93 99anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
24 25anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 83first strand
Strand 2
E
131 133anti-parallel
Strand 3
E
115 121anti-parallel
Strand 4
E
75 82anti-parallel
Strand 5
E
12 18anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 57first strand
Strand 2
E
103 107anti-parallel
Strand 3
E
86 87anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 48first strand
Strand 2
F
31 38anti-parallel
Strand 3
F
16 27anti-parallel
Strand 4
F
4 13anti-parallel
Strand 5
F
66 67anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 77first strand
Strand 2
F
90 93anti-parallel
Strand 3
F
105 107anti-parallel
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