Analysis of interatomic Contacts of Structural Units in PDB entry:
9GD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GD3 entry

There are 12 chains in PDB entry 9GD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 41	ARG 134
B	LYS 16	GLY 102
C	LYS 15	ILE 111
D	THR 29	LYS 122
E	TYR 41	ALA 135
F	ASN 25	GLY 102
G	GLY 8	ILE 111
H	THR 29	ALA 121
I	G -52	C 89
J	G -89	C 52
T	PRO 124	LEU 147
W	PRO 124	GLY 1266

There are 75 helices in PDB entry 9GD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	115	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	100	120	Right-handed alpha
Helix 18	AB9	E	45	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	121	Right-handed alpha
Helix 35	AD8	W	204	210	Right-handed alpha
Helix 36	AD9	W	221	225	Right-handed 310
Helix 37	AE1	W	229	234	Right-handed alpha
Helix 38	AE2	W	238	258	Right-handed alpha
Helix 39	AE3	W	263	282	Right-handed alpha
Helix 40	AE4	W	324	331	Right-handed alpha
Helix 41	AE5	W	331	343	Right-handed alpha
Helix 42	AE6	W	347	351	Right-handed 310
Helix 43	AE7	W	377	394	Right-handed alpha
Helix 44	AE8	W	406	421	Right-handed alpha
Helix 45	AE9	W	433	435	Right-handed 310
Helix 46	AF1	W	436	448	Right-handed alpha
Helix 47	AF2	W	459	471	Right-handed alpha
Helix 48	AF3	W	492	498	Right-handed alpha
Helix 49	AF4	W	498	504	Right-handed alpha
Helix 50	AF5	W	514	520	Right-handed 310
Helix 51	AF6	W	523	532	Right-handed alpha
Helix 52	AF7	W	548	560	Right-handed alpha
Helix 53	AF8	W	576	591	Right-handed alpha
Helix 54	AF9	W	598	603	Right-handed alpha
Helix 55	AG1	W	619	631	Right-handed alpha
Helix 56	AG2	W	633	641	Right-handed alpha
Helix 57	AG3	W	650	661	Right-handed alpha
Helix 58	AG4	W	662	665	Right-handed 310
Helix 59	AG5	W	669	674	Right-handed alpha
Helix 60	AG6	W	675	679	Right-handed 310
Helix 61	AG7	W	682	693	Right-handed alpha
Helix 62	AG8	W	694	711	Right-handed alpha
Helix 63	AG9	W	720	734	Right-handed alpha
Helix 64	AH1	W	746	758	Right-handed alpha
Helix 65	AH2	W	794	806	Right-handed alpha
Helix 66	AH3	W	824	844	Right-handed alpha
Helix 67	AH4	W	1011	1026	Right-handed alpha
Helix 68	AH5	W	1031	1038	Right-handed alpha
Helix 69	AH6	W	1045	1072	Right-handed alpha
Helix 70	AH7	W	1130	1152	Right-handed alpha
Helix 71	AH8	W	1154	1158	Right-handed 310
Helix 72	AH9	W	1176	1191	Right-handed alpha
Helix 73	AI1	W	1194	1201	Right-handed alpha
Helix 74	AI2	W	1202	1209	Right-handed 310
Helix 75	AI3	W	1249	1266	Right-handed alpha

There are 16 sheets in PDB entry 9GD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	179	187	first strand
Strand 2	W	211	217	anti-parallel
Strand 3	W	226	228	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	287	297	first strand
Strand 2	W	303	311	anti-parallel
Strand 3	W	320	323	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	453	456	first strand
Strand 2	W	487	491	parallel
Strand 3	W	428	432	parallel
Strand 4	W	509	512	parallel
Strand 5	W	537	540	parallel
Strand 6	W	397	399	parallel
Strand 7	W	594	595	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	472	473	first strand
Strand 2	W	482	483	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	609	616	first strand
Strand 2	W	814	821	parallel
Strand 3	W	785	788	parallel
Strand 4	W	714	718	parallel
Strand 5	W	766	770	parallel
Strand 6	W	738	741	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	1119	1122	first strand
Strand 2	W	1125	1129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GD3