Analysis of interatomic Contacts of Structural Units in PDB entry:
9GD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GD7 entry

There are 10 chains in PDB entry 9GD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LYS 654	ASN 907
L	ASN 6	PHE 704
M	CYS 180	ASP 202
P	GLN 145	ALA 201
Q	GLN 145	ALA 201
S	CYS 10	MET 4128
T	TYR 32	GLY 538
i	C 19	T 43
j	T 14	G 38
A	GLU 39	SER 136

There are250 helices in PDB entry 9GD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	675	686	Right-handed alpha
Helix 2	AA2	E	706	715	Right-handed alpha
Helix 3	AA3	E	722	733	Right-handed alpha
Helix 4	AA4	E	747	758	Right-handed alpha
Helix 5	AA5	E	770	781	Right-handed alpha
Helix 6	AA6	E	788	804	Right-handed alpha
Helix 7	AA7	E	837	844	Right-handed alpha
Helix 8	AA8	E	868	870	Right-handed 310
Helix 9	AA9	E	871	882	Right-handed alpha
Helix 10	AB1	L	29	49	Right-handed alpha
Helix 11	AB2	L	87	97	Right-handed alpha
Helix 12	AB3	L	106	122	Right-handed alpha
Helix 13	AB4	L	146	156	Right-handed alpha
Helix 14	AB5	L	198	216	Right-handed alpha
Helix 15	AB6	L	217	224	Right-handed alpha
Helix 16	AB7	L	237	241	Right-handed 310
Helix 17	AB8	L	325	332	Right-handed alpha
Helix 18	AB9	L	352	356	Right-handed 310
Helix 19	AC1	L	370	388	Right-handed alpha
Helix 20	AC2	L	441	445	Right-handed 310
Helix 21	AC3	L	447	462	Right-handed alpha
Helix 22	AC4	L	484	500	Right-handed alpha
Helix 23	AC5	L	509	515	Right-handed alpha
Helix 24	AC6	L	519	537	Right-handed alpha
Helix 25	AC7	L	594	605	Right-handed alpha
Helix 26	AC8	L	609	622	Right-handed alpha
Helix 27	AC9	L	628	649	Right-handed alpha
Helix 28	AD1	L	651	667	Right-handed alpha
Helix 29	AD2	L	675	681	Right-handed alpha
Helix 30	AD3	L	682	684	Right-handed 310
Helix 31	AD4	L	693	702	Right-handed alpha
Helix 32	AD5	P	146	198	Right-handed alpha
Helix 33	AD6	Q	146	201	Right-handed alpha
Helix 34	AD7	S	11	21	Right-handed alpha
Helix 35	AD8	S	28	47	Right-handed alpha
Helix 36	AD9	S	51	70	Right-handed alpha
Helix 37	AE1	S	75	97	Right-handed alpha
Helix 38	AE2	S	100	102	Right-handed 310
Helix 39	AE3	S	103	117	Right-handed alpha
Helix 40	AE4	S	118	123	Right-handed 310
Helix 41	AE5	S	124	141	Right-handed alpha
Helix 42	AE6	S	144	148	Right-handed 310
Helix 43	AE7	S	149	161	Right-handed alpha
Helix 44	AE8	S	170	172	Right-handed 310
Helix 45	AE9	S	173	178	Right-handed alpha
Helix 46	AF1	S	186	208	Right-handed alpha
Helix 47	AF2	S	219	232	Right-handed alpha
Helix 48	AF3	S	240	253	Right-handed alpha
Helix 49	AF4	S	265	279	Right-handed alpha
Helix 50	AF5	S	289	301	Right-handed alpha
Helix 51	AF6	S	305	330	Right-handed alpha
Helix 52	AF7	S	333	349	Right-handed alpha
Helix 53	AF8	S	357	369	Right-handed alpha
Helix 54	AF9	S	370	376	Right-handed alpha
Helix 55	AG1	S	377	397	Right-handed alpha
Helix 56	AG2	S	409	424	Right-handed alpha
Helix 57	AG3	S	428	430	Right-handed 310
Helix 58	AG4	S	431	445	Right-handed alpha
Helix 59	AG5	S	450	469	Right-handed alpha
Helix 60	AG6	S	471	493	Right-handed alpha
Helix 61	AG7	S	524	526	Right-handed 310
Helix 62	AG8	S	527	537	Right-handed alpha
Helix 63	AG9	S	537	547	Right-handed alpha
Helix 64	AH1	S	560	579	Right-handed alpha
Helix 65	AH2	S	616	634	Right-handed alpha
Helix 66	AH3	S	644	660	Right-handed alpha
Helix 67	AH4	S	663	680	Right-handed alpha
Helix 68	AH5	S	698	718	Right-handed alpha
Helix 69	AH6	S	719	721	Right-handed 310
Helix 70	AH7	S	725	735	Right-handed alpha
Helix 71	AH8	S	739	743	Right-handed 310
Helix 72	AH9	S	744	760	Right-handed alpha
Helix 73	AI1	S	762	780	Right-handed alpha
Helix 74	AI2	S	788	793	Right-handed alpha
Helix 75	AI3	S	794	798	Right-handed 310
Helix 76	AI4	S	834	839	Right-handed 310
Helix 77	AI5	S	848	863	Right-handed alpha
Helix 78	AI6	S	863	868	Right-handed alpha
Helix 79	AI7	S	869	871	Right-handed 310
Helix 80	AI8	S	910	920	Right-handed alpha
Helix 81	AI9	S	923	948	Right-handed alpha
Helix 82	AJ1	S	958	974	Right-handed alpha
Helix 83	AJ2	S	977	996	Right-handed alpha
Helix 84	AJ3	S	997	1001	Right-handed 310
Helix 85	AJ4	S	1004	1018	Right-handed alpha
Helix 86	AJ5	S	1022	1044	Right-handed alpha
Helix 87	AJ6	S	1045	1052	Right-handed alpha
Helix 88	AJ7	S	1055	1069	Right-handed alpha
Helix 89	AJ8	S	1071	1090	Right-handed alpha
Helix 90	AJ9	S	1093	1099	Right-handed alpha
Helix 91	AK1	S	1100	1118	Right-handed alpha
Helix 92	AK2	S	1122	1141	Right-handed alpha
Helix 93	AK3	S	1142	1147	Right-handed alpha
Helix 94	AK4	S	1164	1175	Right-handed alpha
Helix 95	AK5	S	1180	1195	Right-handed alpha
Helix 96	AK6	S	1196	1198	Right-handed 310
Helix 97	AK7	S	1204	1213	Right-handed alpha
Helix 98	AK8	S	1218	1223	Right-handed alpha
Helix 99	AK9	S	1231	1238	Right-handed alpha
Helix 100	AL1	S	1250	1273	Right-handed alpha
Helix 101	AL2	S	1277	1281	Right-handed 310
Helix 102	AL3	S	1288	1300	Right-handed alpha
Helix 103	AL4	S	1327	1352	Right-handed alpha
Helix 104	AL5	S	1357	1362	Right-handed alpha
Helix 105	AL6	S	1368	1378	Right-handed alpha
Helix 106	AL7	S	1389	1394	Right-handed alpha
Helix 107	AL8	S	1394	1409	Right-handed alpha
Helix 108	AL9	S	1411	1423	Right-handed alpha
Helix 109	AM1	S	1430	1434	Right-handed 310
Helix 110	AM2	S	1442	1461	Right-handed alpha
Helix 111	AM3	S	1477	1492	Right-handed alpha
Helix 112	AM4	S	1504	1521	Right-handed alpha
Helix 113	AM5	S	1523	1533	Right-handed alpha
Helix 114	AM6	S	1555	1574	Right-handed alpha
Helix 115	AM7	S	1576	1586	Right-handed alpha
Helix 116	AM8	S	1590	1607	Right-handed alpha
Helix 117	AM9	S	1612	1625	Right-handed alpha
Helix 118	AN1	S	1638	1656	Right-handed alpha
Helix 119	AN2	S	1667	1680	Right-handed alpha
Helix 120	AN3	S	1685	1694	Right-handed alpha
Helix 121	AN4	S	1695	1699	Right-handed 310
Helix 122	AN5	S	1708	1722	Right-handed alpha
Helix 123	AN6	S	1733	1754	Right-handed alpha
Helix 124	AN7	S	1755	1767	Right-handed alpha
Helix 125	AN8	S	1774	1787	Right-handed alpha
Helix 126	AN9	S	1790	1805	Right-handed alpha
Helix 127	AO1	S	1816	1830	Right-handed alpha
Helix 128	AO2	S	1832	1849	Right-handed alpha
Helix 129	AO3	S	1863	1881	Right-handed alpha
Helix 130	AO4	S	1914	1921	Right-handed alpha
Helix 131	AO5	S	1935	1953	Right-handed alpha
Helix 132	AO6	S	2035	2048	Right-handed alpha
Helix 133	AO7	S	2094	2108	Right-handed alpha
Helix 134	AO8	S	2126	2135	Right-handed alpha
Helix 135	AO9	S	2139	2154	Right-handed alpha
Helix 136	AP1	S	2157	2159	Right-handed 310
Helix 137	AP2	S	2160	2173	Right-handed alpha
Helix 138	AP3	S	2181	2194	Right-handed alpha
Helix 139	AP4	S	2205	2222	Right-handed alpha
Helix 140	AP5	S	2229	2245	Right-handed alpha
Helix 141	AP6	S	2254	2262	Right-handed alpha
Helix 142	AP7	S	2270	2282	Right-handed alpha
Helix 143	AP8	S	2300	2309	Right-handed alpha
Helix 144	AP9	S	2312	2329	Right-handed alpha
Helix 145	AQ1	S	2330	2334	Right-handed 310
Helix 146	AQ2	S	2338	2351	Right-handed alpha
Helix 147	AQ3	S	2359	2369	Right-handed alpha
Helix 148	AQ4	S	2371	2377	Right-handed 310
Helix 149	AQ5	S	2378	2385	Right-handed alpha
Helix 150	AQ6	S	2386	2389	Right-handed 310
Helix 151	AQ7	S	2391	2403	Right-handed alpha
Helix 152	AQ8	S	2411	2419	Right-handed alpha
Helix 153	AQ9	S	2419	2426	Right-handed alpha
Helix 154	AR1	S	2428	2443	Right-handed alpha
Helix 155	AR2	S	2444	2446	Right-handed 310
Helix 156	AR3	S	2447	2460	Right-handed alpha
Helix 157	AR4	S	2467	2484	Right-handed alpha
Helix 158	AR5	S	2492	2509	Right-handed alpha
Helix 159	AR6	S	2514	2527	Right-handed alpha
Helix 160	AR7	S	2534	2545	Right-handed alpha
Helix 161	AR8	S	2553	2565	Right-handed alpha
Helix 162	AR9	S	2723	2730	Right-handed alpha
Helix 163	AS1	S	2732	2736	Right-handed 310
Helix 164	AS2	S	2737	2764	Right-handed alpha
Helix 165	AS3	S	2787	2801	Right-handed alpha
Helix 166	AS4	S	2801	2821	Right-handed alpha
Helix 167	AS5	S	2825	2847	Right-handed alpha
Helix 168	AS6	S	2851	2864	Right-handed alpha
Helix 169	AS7	S	2865	2869	Right-handed 310
Helix 170	AS8	S	2872	2884	Right-handed alpha
Helix 171	AS9	S	2885	2901	Right-handed alpha
Helix 172	AT1	S	2919	2934	Right-handed alpha
Helix 173	AT2	S	2936	2944	Right-handed alpha
Helix 174	AT3	S	2950	2961	Right-handed alpha
Helix 175	AT4	S	2964	2977	Right-handed alpha
Helix 176	AT5	S	2987	3005	Right-handed alpha
Helix 177	AT6	S	3007	3015	Right-handed alpha
Helix 178	AT7	S	3034	3054	Right-handed alpha
Helix 179	AT8	S	3059	3070	Right-handed alpha
Helix 180	AT9	S	3071	3093	Right-handed alpha
Helix 181	AU1	S	3095	3117	Right-handed alpha
Helix 182	AU2	S	3121	3143	Right-handed alpha
Helix 183	AU3	S	3155	3162	Right-handed alpha
Helix 184	AU4	S	3162	3167	Right-handed alpha
Helix 185	AU5	S	3175	3197	Right-handed alpha
Helix 186	AU6	S	3227	3249	Right-handed alpha
Helix 187	AU7	S	3255	3265	Right-handed alpha
Helix 188	AU8	S	3269	3287	Right-handed alpha
Helix 189	AU9	S	3291	3299	Right-handed alpha
Helix 190	AV1	S	3304	3308	Right-handed 310
Helix 191	AV2	S	3319	3344	Right-handed alpha
Helix 192	AV3	S	3347	3352	Right-handed alpha
Helix 193	AV4	S	3354	3364	Right-handed alpha
Helix 194	AV5	S	3369	3393	Right-handed alpha
Helix 195	AV6	S	3408	3428	Right-handed alpha
Helix 196	AV7	S	3442	3455	Right-handed alpha
Helix 197	AV8	S	3458	3463	Right-handed alpha
Helix 198	AV9	S	3464	3475	Right-handed alpha
Helix 199	AW1	S	3475	3480	Right-handed alpha
Helix 200	AW2	S	3481	3485	Right-handed 310
Helix 201	AW3	S	3495	3497	Right-handed 310
Helix 202	AW4	S	3498	3508	Right-handed alpha
Helix 203	AW5	S	3512	3525	Right-handed alpha
Helix 204	AW6	S	3529	3536	Right-handed alpha
Helix 205	AW7	S	3547	3562	Right-handed alpha
Helix 206	AW8	S	3564	3577	Right-handed alpha
Helix 207	AW9	S	3580	3595	Right-handed alpha
Helix 208	AX1	S	3605	3617	Right-handed alpha
Helix 209	AX2	S	3627	3644	Right-handed alpha
Helix 210	AX3	S	3658	3669	Right-handed alpha
Helix 211	AX4	S	3684	3689	Right-handed alpha
Helix 212	AX5	S	3759	3778	Right-handed alpha
Helix 213	AX6	S	3778	3784	Right-handed alpha
Helix 214	AX7	S	3812	3820	Right-handed alpha
Helix 215	AX8	S	3821	3831	Right-handed alpha
Helix 216	AX9	S	3833	3843	Right-handed alpha
Helix 217	AY1	S	3853	3861	Right-handed alpha
Helix 218	AY2	S	3863	3878	Right-handed alpha
Helix 219	AY3	S	3881	3891	Right-handed alpha
Helix 220	AY4	S	3893	3918	Right-handed alpha
Helix 221	AY5	S	3924	3926	Right-handed 310
Helix 222	AY6	S	3947	3953	Right-handed alpha
Helix 223	AY7	S	3964	3969	Right-handed alpha
Helix 224	AY8	S	3978	3989	Right-handed alpha
Helix 225	AY9	S	3990	3991	Right-handed 310
Helix 226	AZ1	S	3996	3996	Right-handed 310
Helix 227	AZ2	S	3997	4003	Right-handed alpha
Helix 228	AZ3	S	4039	4053	Right-handed alpha
Helix 229	AZ4	S	4055	4065	Right-handed alpha
Helix 230	AZ5	S	4073	4083	Right-handed alpha
Helix 231	AZ6	S	4100	4110	Right-handed alpha
Helix 232	AZ7	S	4112	4119	Right-handed alpha
Helix 233	AZ8	S	4121	4125	Right-handed 310
Helix 234	AZ9	T	58	79	Right-handed alpha
Helix 235	BA1	T	112	121	Right-handed alpha
Helix 236	BA2	T	123	135	Right-handed alpha
Helix 237	BA3	T	142	156	Right-handed alpha
Helix 238	BA4	T	179	196	Right-handed alpha
Helix 239	BA5	T	238	244	Right-handed alpha
Helix 240	BA6	T	330	339	Right-handed alpha
Helix 241	BA7	T	377	393	Right-handed alpha
Helix 242	BA8	T	455	469	Right-handed alpha
Helix 243	BA9	T	474	478	Right-handed 310
Helix 244	BB1	T	480	495	Right-handed alpha
Helix 245	BB2	T	510	519	Right-handed alpha
Helix 246	BB3	T	521	529	Right-handed alpha
Helix 247	BB4	A	39	44	Right-handed 310
Helix 248	BB5	A	54	68	Right-handed alpha
Helix 249	BB6	A	90	98	Right-handed alpha
Helix 250	BB7	A	112	122	Right-handed alpha

There are 17 sheets in PDB entry 9GD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	664	665	first strand
Strand 2	E	699	700	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	79	first strand
Strand 2	L	56	59	anti-parallel
Strand 3	L	8	15	parallel
Strand 4	L	129	135	parallel
Strand 5	L	160	165	parallel
Strand 6	L	225	226	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	247	253	first strand
Strand 2	L	257	267	anti-parallel
Strand 3	L	357	364	anti-parallel
Strand 4	L	417	423	anti-parallel
Strand 5	L	404	412	anti-parallel
Strand 6	L	389	395	anti-parallel
Strand 7	L	340	347	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	277	279	first strand
Strand 2	T	317	321	anti-parallel
Strand 3	T	326	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	303	304	first strand
Strand 2	L	289	297	anti-parallel
Strand 3	T	297	304	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	310	311	first strand
Strand 2	T	288	289	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	313	315	first strand
Strand 2	L	320	322	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	540	541	first strand
Strand 2	T	375	376	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	583	584	first strand
Strand 2	S	613	614	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	894	895	first strand
Strand 2	S	904	905	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2587	2588	first strand
Strand 2	S	2776	2777	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3727	3728	first strand
Strand 2	S	3736	3738	anti-parallel
Strand 3	S	3750	3753	anti-parallel
Strand 4	S	3800	3804	anti-parallel
Strand 5	S	3793	3797	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3810	3811	first strand
Strand 2	S	3928	3930	anti-parallel
Strand 3	S	3937	3939	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	103	109	first strand
Strand 2	T	82	88	anti-parallel
Strand 3	T	35	43	parallel
Strand 4	T	161	170	parallel
Strand 5	T	203	204	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	257	262	first strand
Strand 2	T	268	274	anti-parallel
Strand 3	T	366	370	anti-parallel
Strand 4	T	431	436	anti-parallel
Strand 5	T	409	416	anti-parallel
Strand 6	T	394	401	anti-parallel
Strand 7	T	344	352	anti-parallel
Strand 8	T	257	262	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	419	420	first strand
Strand 2	T	426	428	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	82	85	parallel
Strand 3	A	108	111	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GD7