Analysis of interatomic Contacts of Structural Units in PDB entry:
9GDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GDJ entry

There are 3 chains in PDB entry 9GDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7GLU 271
B
 PRO 8GLU 271
C
 THR 7GLU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9GDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
33 47Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
122 127Right-handed 310
Helix 6
AA6
A
128 143Right-handed alpha
Helix 7
AA7
A
155 163Right-handed alpha
Helix 8
AA8
A
226 237Right-handed alpha
Helix 9
AA9
B
14 16Right-handed 310
Helix 10
AB1
B
17 29Right-handed alpha
Helix 11
AB2
B
33 47Right-handed alpha
Helix 12
AB3
B
63 72Right-handed alpha
Helix 13
AB4
B
82 94Right-handed alpha
Helix 14
AB5
B
122 127Right-handed 310
Helix 15
AB6
B
128 143Right-handed alpha
Helix 16
AB7
B
155 163Right-handed alpha
Helix 17
AB8
B
226 237Right-handed alpha
Helix 18
AB9
C
14 28Right-handed alpha
Helix 19
AC1
C
33 47Right-handed alpha
Helix 20
AC2
C
63 72Right-handed alpha
Helix 21
AC3
C
82 94Right-handed alpha
Helix 22
AC4
C
122 127Right-handed 310
Helix 23
AC5
C
128 143Right-handed alpha
Helix 24
AC6
C
155 163Right-handed alpha
Helix 25
AC7
C
226 237Right-handed alpha
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There are 5 sheets in PDB entry 9GDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
75 80parallel
Strand 3
A
54 58parallel
Strand 4
A
116 119parallel
Strand 5
A
148 154parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
239 246anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 175first strand
Strand 2
A
178 185anti-parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
212 222anti-parallel
Strand 5
B
210 222anti-parallel
Strand 6
B
193 207anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
170 175anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
75 80parallel
Strand 3
B
54 58parallel
Strand 4
B
116 119parallel
Strand 5
B
148 154parallel
Strand 6
B
259 266anti-parallel
Strand 7
B
239 246anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
75 80parallel
Strand 3
C
54 58parallel
Strand 4
C
116 119parallel
Strand 5
C
148 154parallel
Strand 6
C
259 266anti-parallel
Strand 7
C
239 246anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 175first strand
Strand 2
C
178 185anti-parallel
Strand 3
C
193 202anti-parallel
Strand 4
C
213 222anti-parallel
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