Analysis of interatomic Contacts of Structural Units in PDB entry:
9GDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GDK entry

There are 2 chains in PDB entry 9GDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2155LEU 2500
B
 MET 2156LEU 2500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9GDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2177 2187Right-handed alpha
Helix 2
AA2
A
2196 2200Right-handed 310
Helix 3
AA3
A
2202 2207Right-handed alpha
Helix 4
AA4
A
2207 2216Right-handed alpha
Helix 5
AA5
A
2234 2241Right-handed alpha
Helix 6
AA6
A
2244 2248Right-handed 310
Helix 7
AA7
A
2266 2274Right-handed alpha
Helix 8
AA8
A
2274 2285Right-handed alpha
Helix 9
AA9
A
2287 2292Right-handed alpha
Helix 10
AB1
A
2304 2308Right-handed 310
Helix 11
AB2
A
2359 2369Right-handed alpha
Helix 12
AB3
A
2373 2381Right-handed alpha
Helix 13
AB4
A
2395 2397Right-handed 310
Helix 14
AB5
A
2398 2413Right-handed alpha
Helix 15
AB6
A
2422 2427Right-handed alpha
Helix 16
AB7
A
2432 2444Right-handed alpha
Helix 17
AB8
B
2177 2187Right-handed alpha
Helix 18
AB9
B
2196 2200Right-handed 310
Helix 19
AC1
B
2202 2206Right-handed 310
Helix 20
AC2
B
2207 2216Right-handed alpha
Helix 21
AC3
B
2234 2241Right-handed alpha
Helix 22
AC4
B
2244 2248Right-handed 310
Helix 23
AC5
B
2266 2274Right-handed alpha
Helix 24
AC6
B
2274 2285Right-handed alpha
Helix 25
AC7
B
2287 2292Right-handed alpha
Helix 26
AC8
B
2304 2308Right-handed 310
Helix 27
AC9
B
2359 2369Right-handed alpha
Helix 28
AD1
B
2373 2382Right-handed alpha
Helix 29
AD2
B
2395 2397Right-handed 310
Helix 30
AD3
B
2398 2412Right-handed alpha
Helix 31
AD4
B
2422 2427Right-handed alpha
Helix 32
AD5
B
2432 2444Right-handed alpha
Helix 33
AD6
B
2483 2485Right-handed 310
Helix 34
AD7
B
2486 2499Right-handed alpha
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There are 4 sheets in PDB entry 9GDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2159 2162first strand
Strand 2
A
2167 2170anti-parallel
Strand 3
A
2192 2194parallel
Strand 4
A
2457 2460anti-parallel
Strand 5
A
2342 2350anti-parallel
Strand 6
A
2473 2479anti-parallel
Strand 7
A
2315 2319anti-parallel
Strand 8
A
2259 2261anti-parallel
Strand 9
A
2223 2224anti-parallel
Strand 10
A
2229 2230anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2333 2337first strand
Strand 2
A
2465 2470anti-parallel
Strand 3
A
2387 2394anti-parallel
Strand 4
A
2448 2453anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2159 2162first strand
Strand 2
B
2167 2170anti-parallel
Strand 3
B
2192 2194parallel
Strand 4
B
2457 2460anti-parallel
Strand 5
B
2341 2350anti-parallel
Strand 6
B
2473 2481anti-parallel
Strand 7
B
2315 2319anti-parallel
Strand 8
B
2259 2261anti-parallel
Strand 9
B
2223 2224anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2333 2337first strand
Strand 2
B
2465 2470anti-parallel
Strand 3
B
2387 2394anti-parallel
Strand 4
B
2448 2453anti-parallel
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