Analysis of interatomic Contacts of Structural Units in PDB entry:
9GED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GED entry

There are 3 chains in PDB entry 9GED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 808	ASN 992
B	CYS 808	ASN 992
C	CYS 808	ASN 992

There are 15 helices in PDB entry 9GED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	865	873	Right-handed alpha
Helix 2	AA2	A	874	876	Right-handed 310
Helix 3	AA3	A	890	896	Right-handed alpha
Helix 4	AA4	A	901	908	Right-handed alpha
Helix 5	AA5	A	940	949	Right-handed alpha
Helix 6	AA6	B	865	873	Right-handed alpha
Helix 7	AA7	B	874	876	Right-handed 310
Helix 8	AA8	B	890	896	Right-handed alpha
Helix 9	AA9	B	901	908	Right-handed alpha
Helix 10	AB1	B	940	949	Right-handed alpha
Helix 11	AB2	C	865	873	Right-handed alpha
Helix 12	AB3	C	874	876	Right-handed 310
Helix 13	AB4	C	890	896	Right-handed alpha
Helix 14	AB5	C	901	908	Right-handed alpha
Helix 15	AB6	C	940	949	Right-handed alpha

There are 15 sheets in PDB entry 9GED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	830	first strand
Strand 2	A	836	841	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	846	first strand
Strand 2	A	849	852	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	918	first strand
Strand 2	A	879	886	anti-parallel
Strand 3	C	976	982	anti-parallel
Strand 4	C	985	991	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	928	first strand
Strand 2	A	935	939	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	955	first strand
Strand 2	A	958	961	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	991	first strand
Strand 2	A	976	982	anti-parallel
Strand 3	B	879	886	anti-parallel
Strand 4	B	913	918	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	830	first strand
Strand 2	B	836	841	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	846	first strand
Strand 2	B	849	852	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	924	928	first strand
Strand 2	B	935	939	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	952	955	first strand
Strand 2	B	958	961	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	985	991	first strand
Strand 2	B	976	982	anti-parallel
Strand 3	C	879	886	anti-parallel
Strand 4	C	913	918	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	825	830	first strand
Strand 2	C	836	841	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	846	first strand
Strand 2	C	849	852	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	924	928	first strand
Strand 2	C	935	939	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	952	955	first strand
Strand 2	C	958	961	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GED

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GED