Analysis of interatomic Contacts of Structural Units in PDB entry:
9GEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GEK entry

There is 1 chain in PDB entry 9GEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -58GLY 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9GEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-44 -28Right-handed alpha
Helix 2
AA2
A
-18 -8Right-handed alpha
Helix 3
AA3
A
4 13Right-handed alpha
Helix 4
AA4
A
22 27Right-handed alpha
Helix 5
AA5
A
30 35Right-handed alpha
Helix 6
AA6
A
68 70Right-handed 310
Helix 7
AA7
A
71 82Right-handed alpha
Helix 8
AA8
A
93 102Right-handed alpha
Helix 9
AA9
A
125 141Right-handed alpha
Helix 10
AB1
A
149 159Right-handed alpha
Helix 11
AB2
A
168 170Right-handed 310
Helix 12
AB3
A
171 177Right-handed alpha
Helix 13
AB4
A
212 223Right-handed alpha
Helix 14
AB5
A
226 237Right-handed alpha
Helix 15
AB6
A
244 252Right-handed alpha
Helix 16
AB7
A
254 267Right-handed alpha
Helix 17
AB8
A
275 292Right-handed alpha
Helix 18
AB9
A
296 311Right-handed alpha
Helix 19
AC1
A
313 324Right-handed alpha
Helix 20
AC2
A
325 327Right-handed 310
Helix 21
AC3
A
328 342Right-handed alpha
Helix 22
AC4
A
346 360Right-handed alpha
Helix 23
AC5
A
365 380Right-handed alpha
Helix 24
AC6
A
385 401Right-handed alpha
Helix 25
AC7
A
402 404Right-handed 310
Helix 26
AC8
A
405 419Right-handed alpha
Helix 27
AC9
A
423 432Right-handed alpha
Helix 28
AD1
A
433 441Right-handed alpha
Helix 29
AD2
A
445 465Right-handed alpha
Helix 30
AD3
A
474 478Right-handed 310
Helix 31
AD4
A
490 505Right-handed alpha
Helix 32
AD5
A
506 510Right-handed 310
Helix 33
AD6
A
536 540Right-handed 310
Helix 34
AD7
A
567 571Right-handed 310
Helix 35
AD8
A
579 592Right-handed alpha
Helix 36
AD9
A
601 606Right-handed alpha
Helix 37
AE1
A
609 632Right-handed alpha
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There are 8 sheets in PDB entry 9GEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-25 -22first strand
Strand 2
A
-53 -50parallel
Strand 3
A
-1 3parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
241 242anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-25 -22first strand
Strand 2
A
-53 -50parallel
Strand 3
A
-1 3parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
268 269parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
42 43anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
162 167parallel
Strand 3
A
54 58anti-parallel
Strand 4
A
182 185anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
115 122anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 194anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
521 528anti-parallel
Strand 3
A
534 535anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
521 528anti-parallel
Strand 3
A
559 566anti-parallel
Strand 4
A
595 600parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il