Analysis of interatomic Contacts of Structural Units in PDB entry:
9GEN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GEN entry

There are 11 chains in PDB entry 9GEN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ALA 135
B	ARG 23	GLY 101
C	ARG 11	LYS 118
D	LYS 28	ALA 121
E	PRO 38	ARG 134
F	ASP 24	GLY 102
G	ARG 11	PRO 117
H	LYS 28	ALA 121
I	T -72	A 72
J	T -72	A 72
L	CYS 167	GLU 743

There are 60 helices in PDB entry 9GEN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	35	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	121	Right-handed alpha
Helix 18	AB9	E	45	57	Right-handed alpha
Helix 19	AC1	E	63	76	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	46	73	Right-handed alpha
Helix 29	AD2	G	79	89	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	101	121	Right-handed alpha
Helix 35	AD8	L	226	234	Right-handed alpha
Helix 36	AD9	L	238	242	Right-handed 310
Helix 37	AE1	L	250	264	Right-handed alpha
Helix 38	AE2	L	346	353	Right-handed alpha
Helix 39	AE3	L	386	390	Right-handed 310
Helix 40	AE4	L	403	408	Right-handed 310
Helix 41	AE5	L	409	434	Right-handed alpha
Helix 42	AE6	L	438	462	Right-handed alpha
Helix 43	AE7	L	463	466	Right-handed 310
Helix 44	AE8	L	468	476	Right-handed alpha
Helix 45	AE9	L	491	498	Right-handed alpha
Helix 46	AF1	L	499	503	Right-handed 310
Helix 47	AF2	L	528	530	Right-handed 310
Helix 48	AF3	L	534	540	Right-handed alpha
Helix 49	AF4	L	543	552	Right-handed alpha
Helix 50	AF5	L	566	571	Right-handed alpha
Helix 51	AF6	L	582	595	Right-handed alpha
Helix 52	AF7	L	598	607	Right-handed alpha
Helix 53	AF8	L	613	622	Right-handed alpha
Helix 54	AF9	L	623	635	Right-handed alpha
Helix 55	AG1	L	636	640	Right-handed 310
Helix 56	AG2	L	641	649	Right-handed alpha
Helix 57	AG3	L	658	675	Right-handed alpha
Helix 58	AG4	L	689	695	Right-handed alpha
Helix 59	AG5	L	698	707	Right-handed alpha
Helix 60	AG6	L	738	742	Right-handed 310

There are 12 sheets in PDB entry 9GEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	193	194	first strand
Strand 2	L	330	331	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	218	219	first strand
Strand 2	L	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	244	249	first strand
Strand 2	L	554	556	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	508	510	first strand
Strand 2	L	524	526	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	711	713	first strand
Strand 2	L	727	729	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GEN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GEN