Analysis of interatomic Contacts of Structural Units in PDB entry:
9GER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GER entry

There are 14 chains in PDB entry 9GER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	CYS 1	ALA 104
L	VAL 113	ALA 578
M	CYS 1	ALA 104
N	VAL 113	ALA 578
A	HIS 39	GLU 133
B	ARG 23	GLY 101
C	LYS 13	LYS 118
D	LYS 28	ALA 121
E	HIS 39	GLU 133
F	ARG 23	GLY 101
G	ARG 11	PRO 117
H	LYS 28	ALA 121
I	T -72	A 72
J	T -72	A 72

There are 85 helices in PDB entry 9GER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	60	69	Right-handed alpha
Helix 2	AA2	K	72	76	Right-handed 310
Helix 3	AA3	K	84	98	Right-handed alpha
Helix 4	AA4	L	173	178	Right-handed alpha
Helix 5	AA5	L	180	186	Right-handed alpha
Helix 6	AA6	L	219	224	Right-handed 310
Helix 7	AA7	L	239	242	Right-handed 310
Helix 8	AA8	L	243	268	Right-handed alpha
Helix 9	AA9	L	272	297	Right-handed alpha
Helix 10	AB1	L	298	300	Right-handed 310
Helix 11	AB2	L	302	310	Right-handed alpha
Helix 12	AB3	L	325	332	Right-handed alpha
Helix 13	AB4	L	333	339	Right-handed 310
Helix 14	AB5	L	362	365	Right-handed 310
Helix 15	AB6	L	368	373	Right-handed alpha
Helix 16	AB7	L	377	386	Right-handed alpha
Helix 17	AB8	L	400	405	Right-handed alpha
Helix 18	AB9	L	416	429	Right-handed alpha
Helix 19	AC1	L	432	440	Right-handed alpha
Helix 20	AC2	L	447	456	Right-handed alpha
Helix 21	AC3	L	458	468	Right-handed alpha
Helix 22	AC4	L	470	474	Right-handed 310
Helix 23	AC5	L	475	483	Right-handed alpha
Helix 24	AC6	L	494	508	Right-handed alpha
Helix 25	AC7	L	521	528	Right-handed alpha
Helix 26	AC8	L	532	541	Right-handed alpha
Helix 27	AC9	L	572	576	Right-handed 310
Helix 28	AD1	M	60	68	Right-handed alpha
Helix 29	AD2	M	72	76	Right-handed 310
Helix 30	AD3	M	84	98	Right-handed alpha
Helix 31	AD4	N	180	187	Right-handed alpha
Helix 32	AD5	N	243	268	Right-handed alpha
Helix 33	AD6	N	272	297	Right-handed alpha
Helix 34	AD7	N	298	300	Right-handed 310
Helix 35	AD8	N	302	310	Right-handed alpha
Helix 36	AD9	N	327	333	Right-handed alpha
Helix 37	AE1	N	334	338	Right-handed 310
Helix 38	AE2	N	368	374	Right-handed alpha
Helix 39	AE3	N	377	386	Right-handed alpha
Helix 40	AE4	N	400	405	Right-handed alpha
Helix 41	AE5	N	416	429	Right-handed alpha
Helix 42	AE6	N	432	441	Right-handed alpha
Helix 43	AE7	N	447	456	Right-handed alpha
Helix 44	AE8	N	457	469	Right-handed alpha
Helix 45	AE9	N	470	474	Right-handed 310
Helix 46	AF1	N	475	483	Right-handed alpha
Helix 47	AF2	N	492	508	Right-handed alpha
Helix 48	AF3	N	521	529	Right-handed alpha
Helix 49	AF4	N	535	541	Right-handed alpha
Helix 50	AF5	N	572	576	Right-handed 310
Helix 51	AF6	A	44	55	Right-handed alpha
Helix 52	AF7	A	64	75	Right-handed alpha
Helix 53	AF8	A	76	78	Right-handed 310
Helix 54	AF9	A	87	114	Right-handed alpha
Helix 55	AG1	A	120	132	Right-handed alpha
Helix 56	AG2	B	25	29	Right-handed 310
Helix 57	AG3	B	30	39	Right-handed alpha
Helix 58	AG4	B	49	76	Right-handed alpha
Helix 59	AG5	B	82	94	Right-handed alpha
Helix 60	AG6	C	16	22	Right-handed alpha
Helix 61	AG7	C	27	37	Right-handed alpha
Helix 62	AG8	C	46	71	Right-handed alpha
Helix 63	AG9	C	79	90	Right-handed alpha
Helix 64	AH1	C	91	97	Right-handed alpha
Helix 65	AH2	D	36	46	Right-handed alpha
Helix 66	AH3	D	52	81	Right-handed alpha
Helix 67	AH4	D	87	99	Right-handed alpha
Helix 68	AH5	D	102	121	Right-handed alpha
Helix 69	AH6	E	44	55	Right-handed alpha
Helix 70	AH7	E	64	77	Right-handed alpha
Helix 71	AH8	E	87	114	Right-handed alpha
Helix 72	AH9	E	120	132	Right-handed alpha
Helix 73	AI1	F	24	29	Right-handed 310
Helix 74	AI2	F	30	42	Right-handed alpha
Helix 75	AI3	F	49	76	Right-handed alpha
Helix 76	AI4	F	82	94	Right-handed alpha
Helix 77	AI5	G	16	21	Right-handed alpha
Helix 78	AI6	G	27	37	Right-handed alpha
Helix 79	AI7	G	45	71	Right-handed alpha
Helix 80	AI8	G	79	89	Right-handed alpha
Helix 81	AI9	G	90	97	Right-handed alpha
Helix 82	AJ1	H	34	46	Right-handed alpha
Helix 83	AJ2	H	52	81	Right-handed alpha
Helix 84	AJ3	H	87	99	Right-handed alpha
Helix 85	AJ4	H	101	121	Right-handed alpha

There are 10 sheets in PDB entry 9GER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	83	first strand
Strand 2	L	388	390	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	342	343	first strand
Strand 2	L	359	360	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	545	546	first strand
Strand 2	L	562	563	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	78	83	first strand
Strand 2	N	388	390	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	188	189	first strand
Strand 2	N	196	197	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	342	344	first strand
Strand 2	N	358	360	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GER

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GER