Analysis of interatomic Contacts of Structural Units in PDB entry:
9GF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GF8 entry

There are 2 chains in PDB entry 9GF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 94GLU 511
B
 VAL 4SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9GF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 132Right-handed alpha
Helix 2
AA2
A
140 144Right-handed alpha
Helix 3
AA3
A
145 169Right-handed alpha
Helix 4
AA4
A
171 188Right-handed alpha
Helix 5
AA5
A
193 203Right-handed alpha
Helix 6
AA6
A
206 214Right-handed alpha
Helix 7
AA7
A
214 222Right-handed alpha
Helix 8
AA8
A
227 254Right-handed alpha
Helix 9
AA9
A
258 277Right-handed alpha
Helix 10
AB1
A
278 280Right-handed 310
Helix 11
AB2
A
312 317Right-handed 310
Helix 12
AB3
A
318 333Right-handed alpha
Helix 13
AB4
A
335 341Right-handed alpha
Helix 14
AB5
A
342 347Right-handed alpha
Helix 15
AB6
A
355 378Right-handed alpha
Helix 16
AB7
A
382 385Right-handed 310
Helix 17
AB8
A
386 404Right-handed alpha
Helix 18
AB9
A
409 429Right-handed alpha
Helix 19
AC1
A
430 440Right-handed alpha
Helix 20
AC2
A
443 455Right-handed alpha
Helix 21
AC3
A
455 461Right-handed alpha
Helix 22
AC4
A
461 474Right-handed alpha
Helix 23
AC5
A
477 484Right-handed alpha
Helix 24
AC6
A
484 495Right-handed alpha
Helix 25
AC7
A
499 508Right-handed alpha
Helix 26
AC8
A
509 511Right-handed 310
Helix 27
AC9
B
30 35Right-handed alpha
Helix 28
AD1
B
91 95Right-handed 310
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There are 3 sheets in PDB entry 9GF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
72 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
96 104anti-parallel
Strand 4
B
37 44anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
96 104anti-parallel
Strand 4
B
111 114anti-parallel
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