Analysis of interatomic Contacts of Structural Units in PDB entry:
9GFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GFM entry

There are 11 chains in PDB entry 9GFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLY 140SER 189
K
 A -57 A 81
L
 T -81 T 57
M
 PRO 43ALA 135
N
 VAL 21GLY 102
O
 LYS 13LYS 118
P
 LYS 30LYS 125
Q
 LYS 36ALA 135
R
 ASP 24GLY 102
S
 GLY 8LYS 118
T
 ARG 31SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9GFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
141 159Right-handed alpha
Helix 2
AA2
H
172 176Right-handed 310
Helix 3
AA3
H
177 188Right-handed alpha
Helix 4
AA4
M
44 57Right-handed alpha
Helix 5
AA5
M
63 76Right-handed alpha
Helix 6
AA6
M
85 114Right-handed alpha
Helix 7
AA7
M
120 132Right-handed alpha
Helix 8
AA8
N
24 29Right-handed 310
Helix 9
AA9
N
30 41Right-handed alpha
Helix 10
AB1
N
49 76Right-handed alpha
Helix 11
AB2
N
82 93Right-handed alpha
Helix 12
AB3
O
16 22Right-handed alpha
Helix 13
AB4
O
26 37Right-handed alpha
Helix 14
AB5
O
45 73Right-handed alpha
Helix 15
AB6
O
79 90Right-handed alpha
Helix 16
AB7
O
90 97Right-handed alpha
Helix 17
AB8
O
112 116Right-handed 310
Helix 18
AB9
P
37 46Right-handed alpha
Helix 19
AC1
P
55 84Right-handed alpha
Helix 20
AC2
P
90 102Right-handed alpha
Helix 21
AC3
P
103 125Right-handed alpha
Helix 22
AC4
Q
45 57Right-handed alpha
Helix 23
AC5
Q
63 76Right-handed alpha
Helix 24
AC6
Q
87 114Right-handed alpha
Helix 25
AC7
Q
120 131Right-handed alpha
Helix 26
AC8
R
25 29Right-handed 310
Helix 27
AC9
R
30 41Right-handed alpha
Helix 28
AD1
R
49 76Right-handed alpha
Helix 29
AD2
R
82 93Right-handed alpha
Helix 30
AD3
S
16 22Right-handed alpha
Helix 31
AD4
S
26 37Right-handed alpha
Helix 32
AD5
S
45 73Right-handed alpha
Helix 33
AD6
S
79 90Right-handed alpha
Helix 34
AD7
S
90 97Right-handed alpha
Helix 35
AD8
S
112 116Right-handed 310
Helix 36
AD9
T
37 49Right-handed alpha
Helix 37
AE1
T
55 83Right-handed alpha
Helix 38
AE2
T
90 102Right-handed alpha
Helix 39
AE3
T
104 123Right-handed alpha
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There are 10 sheets in PDB entry 9GFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
83 84first strand
Strand 2
N
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
118 119first strand
Strand 2
N
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
96 98first strand
Strand 2
S
100 102parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
42 43first strand
Strand 2
P
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
77 78first strand
Strand 2
P
53 54parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
100 102first strand
Strand 2
R
96 98parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
83 84first strand
Strand 2
R
80 81parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
118 119first strand
Strand 2
R
45 46parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
42 43first strand
Strand 2
T
88 89parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
77 78first strand
Strand 2
T
53 54parallel
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