Analysis of interatomic Contacts of Structural Units in PDB entry:
9GFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GFP entry

There are 2 chains in PDB entry 9GFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8LYS 265
B
 GLU 10LYS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9GFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 92Right-handed alpha
Helix 2
AA2
A
104 107Right-handed 310
Helix 3
AA3
A
115 128Right-handed alpha
Helix 4
AA4
A
131 145Right-handed alpha
Helix 5
AA5
A
148 161Right-handed alpha
Helix 6
AA6
A
163 173Right-handed alpha
Helix 7
AA7
A
181 189Right-handed alpha
Helix 8
AA8
A
192 203Right-handed alpha
Helix 9
AA9
A
206 224Right-handed alpha
Helix 10
AB1
A
229 237Right-handed alpha
Helix 11
AB2
A
241 254Right-handed alpha
Helix 12
AB3
A
256 265Right-handed alpha
Helix 13
AB4
B
77 93Right-handed alpha
Helix 14
AB5
B
115 128Right-handed alpha
Helix 15
AB6
B
131 145Right-handed alpha
Helix 16
AB7
B
148 161Right-handed alpha
Helix 17
AB8
B
163 174Right-handed alpha
Helix 18
AB9
B
181 190Right-handed alpha
Helix 19
AC1
B
192 203Right-handed alpha
Helix 20
AC2
B
206 226Right-handed alpha
Helix 21
AC3
B
229 237Right-handed alpha
Helix 22
AC4
B
241 254Right-handed alpha
Helix 23
AC5
B
256 265Right-handed alpha
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There are 4 sheets in PDB entry 9GFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
30 36anti-parallel
Strand 4
A
39 43anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
109 113anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
30 36anti-parallel
Strand 4
B
39 43anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
47 51anti-parallel
Strand 4
B
109 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il