Analysis of interatomic Contacts of Structural Units in PDB entry:
9GFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GFS entry

There are 3 chains in PDB entry 9GFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -5	SER 298
B	GLY 0	PHE 309
C	GLY 0	PHE 57

There are 46 helices in PDB entry 9GFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	12	20	Right-handed alpha
Helix 3	AA3	A	21	25	Right-handed 310
Helix 4	AA4	A	41	58	Right-handed alpha
Helix 5	AA5	A	71	94	Right-handed alpha
Helix 6	AA6	A	112	122	Right-handed alpha
Helix 7	AA7	A	133	147	Right-handed alpha
Helix 8	AA8	A	165	171	Right-handed alpha
Helix 9	AA9	A	211	217	Right-handed alpha
Helix 10	AB1	A	221	238	Right-handed alpha
Helix 11	AB2	A	250	264	Right-handed alpha
Helix 12	AB3	B	5	9	Right-handed 310
Helix 13	AB4	B	12	20	Right-handed alpha
Helix 14	AB5	B	21	25	Right-handed 310
Helix 15	AB6	B	41	58	Right-handed alpha
Helix 16	AB7	B	71	94	Right-handed alpha
Helix 17	AB8	B	112	122	Right-handed alpha
Helix 18	AB9	B	133	147	Right-handed alpha
Helix 19	AC1	B	165	170	Right-handed alpha
Helix 20	AC2	B	211	217	Right-handed alpha
Helix 21	AC3	B	221	238	Right-handed alpha
Helix 22	AC4	B	250	264	Right-handed alpha
Helix 23	AC5	B	294	299	Right-handed alpha
Helix 24	AC6	B	302	309	Right-handed 310
Helix 25	AC7	C	5	9	Right-handed 310
Helix 26	AC8	C	12	20	Right-handed alpha
Helix 27	AC9	C	21	25	Right-handed 310
Helix 28	AD1	C	41	58	Right-handed alpha
Helix 29	AD2	C	71	94	Right-handed alpha
Helix 30	AD3	C	112	122	Right-handed alpha
Helix 31	AD4	C	133	147	Right-handed alpha
Helix 32	AD5	C	165	170	Right-handed alpha
Helix 33	AD6	C	211	217	Right-handed alpha
Helix 34	AD7	C	221	238	Right-handed alpha
Helix 35	AD8	C	250	264	Right-handed alpha
Helix 36	AD9	D	5	9	Right-handed 310
Helix 37	AE1	D	12	20	Right-handed alpha
Helix 38	AE2	D	21	25	Right-handed 310
Helix 39	AE3	D	41	58	Right-handed alpha
Helix 40	AE4	D	71	94	Right-handed alpha
Helix 41	AE5	D	112	122	Right-handed alpha
Helix 42	AE6	D	133	147	Right-handed alpha
Helix 43	AE7	D	165	170	Right-handed alpha
Helix 44	AE8	D	211	217	Right-handed alpha
Helix 45	AE9	D	221	238	Right-handed alpha
Helix 46	AF1	D	250	264	Right-handed alpha

There are 12 sheets in PDB entry 9GFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-4	-1	first strand
Strand 2	A	268	276	parallel
Strand 3	A	279	287	anti-parallel
Strand 4	A	241	248	anti-parallel
Strand 5	A	177	182	parallel
Strand 6	A	101	106	parallel
Strand 7	A	125	131	parallel
Strand 8	A	153	157	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	35	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	218	219	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	35	37	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	125	131	parallel
Strand 3	B	101	106	parallel
Strand 4	B	177	182	parallel
Strand 5	B	241	248	parallel
Strand 6	B	279	287	anti-parallel
Strand 7	B	268	276	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	218	219	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	35	37	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	157	first strand
Strand 2	C	125	131	parallel
Strand 3	C	101	106	parallel
Strand 4	C	177	182	parallel
Strand 5	C	241	248	parallel
Strand 6	C	279	287	anti-parallel
Strand 7	C	268	276	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	218	219	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-6	-3	first strand
Strand 2	D	268	276	parallel
Strand 3	D	279	287	anti-parallel
Strand 4	D	241	248	anti-parallel
Strand 5	D	177	182	parallel
Strand 6	D	101	106	parallel
Strand 7	D	125	131	parallel
Strand 8	D	153	157	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	35	37	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	218	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GFS