Analysis of interatomic Contacts of Structural Units in PDB entry:
9GFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GFZ entry

There are 2 chains in PDB entry 9GFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 302SER 596
B
 SER 307SER 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9GFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 319Right-handed alpha
Helix 2
AA2
A
356 369Right-handed alpha
Helix 3
AA3
A
397 403Right-handed alpha
Helix 4
AA4
A
411 432Right-handed alpha
Helix 5
AA5
A
443 445Right-handed 310
Helix 6
AA6
A
461 470Right-handed alpha
Helix 7
AA7
A
485 490Right-handed alpha
Helix 8
AA8
A
496 513Right-handed alpha
Helix 9
AA9
A
529 539Right-handed alpha
Helix 10
AB1
A
542 549Right-handed alpha
Helix 11
AB2
A
552 556Right-handed 310
Helix 12
AB3
A
560 575Right-handed alpha
Helix 13
AB4
A
578 582Right-handed 310
Helix 14
AB5
A
584 594Right-handed alpha
Helix 15
AB6
B
311 316Right-handed alpha
Helix 16
AB7
B
323 325Right-handed 310
Helix 17
AB8
B
357 369Right-handed alpha
Helix 18
AB9
B
398 403Right-handed alpha
Helix 19
AC1
B
411 432Right-handed alpha
Helix 20
AC2
B
461 471Right-handed alpha
Helix 21
AC3
B
485 490Right-handed alpha
Helix 22
AC4
B
496 513Right-handed alpha
Helix 23
AC5
B
529 538Right-handed alpha
Helix 24
AC6
B
544 549Right-handed alpha
Helix 25
AC7
B
552 556Right-handed 310
Helix 26
AC8
B
560 575Right-handed alpha
Helix 27
AC9
B
578 582Right-handed 310
Helix 28
AD1
B
584 594Right-handed alpha
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There are 4 sheets in PDB entry 9GFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
377 381parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
345 351anti-parallel
Strand 5
A
336 340anti-parallel
Strand 6
A
327 329anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
455 457anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
377 380parallel
Strand 3
B
386 391anti-parallel
Strand 4
B
344 351anti-parallel
Strand 5
B
335 341anti-parallel
Strand 6
B
327 330anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 397first strand
Strand 2
B
447 449anti-parallel
Strand 3
B
455 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il