Analysis of interatomic Contacts of Structural Units in PDB entry:
9GG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GG5 entry

There are 4 chains in PDB entry 9GG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PRO 10	PRO 321
A	VAL 5	VAL 246
B	GLU 3	ASN 340
C	ALA 10	GLU 63

There are 25 helices in PDB entry 9GG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	18	25	Right-handed alpha
Helix 2	AA2	R	28	56	Right-handed alpha
Helix 3	AA3	R	61	91	Right-handed alpha
Helix 4	AA4	R	103	136	Right-handed alpha
Helix 5	AA5	R	146	165	Right-handed alpha
Helix 6	AA6	R	166	170	Right-handed 310
Helix 7	AA7	R	190	228	Right-handed alpha
Helix 8	AA8	R	237	270	Right-handed alpha
Helix 9	AA9	R	283	309	Right-handed alpha
Helix 10	AB1	R	312	320	Right-handed alpha
Helix 11	AB2	A	6	31	Right-handed alpha
Helix 12	AB3	A	95	101	Right-handed 310
Helix 13	AB4	A	117	130	Right-handed alpha
Helix 14	AB5	A	131	135	Right-handed 310
Helix 15	AB6	A	145	155	Right-handed alpha
Helix 16	AB7	A	159	163	Right-handed 310
Helix 17	AB8	A	164	168	Right-handed 310
Helix 18	AB9	A	183	204	Right-handed alpha
Helix 19	AC1	A	222	246	Right-handed alpha
Helix 20	AC2	B	4	26	Right-handed alpha
Helix 21	AC3	B	29	35	Right-handed alpha
Helix 22	AC4	C	11	24	Right-handed alpha
Helix 23	AC5	C	29	44	Right-handed alpha
Helix 24	AC6	C	45	48	Right-handed 310
Helix 25	AC7	C	55	59	Right-handed 310

There are 9 sheets in PDB entry 9GG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	174	177	first strand
Strand 2	R	182	185	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	211	214	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GG5