Analysis of interatomic Contacts of Structural Units in PDB entry:
9GGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GGE entry

There are 5 chains in PDB entry 9GGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67LYS 1233
B
 GLU 67ALA 482
C
 GLU 67ALA 482
P
 G 8 C 25
T
 C 14 C 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 9GGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 88Right-handed alpha
Helix 2
AA2
A
96 110Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
180 182Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
270 276Right-handed alpha
Helix 8
AA8
A
277 283Right-handed 310
Helix 9
AA9
A
294 303Right-handed alpha
Helix 10
AB1
A
305 317Right-handed alpha
Helix 11
AB2
A
345 351Right-handed 310
Helix 12
AB3
A
355 364Right-handed alpha
Helix 13
AB4
A
375 380Right-handed alpha
Helix 14
AB5
A
381 388Right-handed alpha
Helix 15
AB6
A
388 418Right-handed alpha
Helix 16
AB7
A
420 430Right-handed alpha
Helix 17
AB8
A
439 471Right-handed alpha
Helix 18
AB9
A
472 482Right-handed 310
Helix 19
AC1
A
534 554Right-handed alpha
Helix 20
AC2
A
555 558Right-handed 310
Helix 21
AC3
A
570 576Right-handed alpha
Helix 22
AC4
A
598 604Right-handed alpha
Helix 23
AC5
A
767 769Right-handed 310
Helix 24
AC6
A
770 777Right-handed alpha
Helix 25
AC7
A
786 810Right-handed alpha
Helix 26
AC8
A
822 828Right-handed alpha
Helix 27
AC9
A
874 878Right-handed 310
Helix 28
AD1
A
893 908Right-handed alpha
Helix 29
AD2
A
914 922Right-handed alpha
Helix 30
AD3
A
930 939Right-handed alpha
Helix 31
AD4
A
942 955Right-handed alpha
Helix 32
AD5
A
958 970Right-handed alpha
Helix 33
AD6
A
974 987Right-handed alpha
Helix 34
AD7
A
1054 1066Right-handed alpha
Helix 35
AD8
A
1084 1089Right-handed alpha
Helix 36
AD9
A
1092 1123Right-handed alpha
Helix 37
AE1
A
1145 1169Right-handed alpha
Helix 38
AE2
A
1174 1178Right-handed 310
Helix 39
AE3
A
1204 1210Right-handed alpha
Helix 40
AE4
A
1219 1228Right-handed alpha
Helix 41
AE5
B
68 76Right-handed alpha
Helix 42
AE6
B
87 94Right-handed alpha
Helix 43
AE7
B
100 119Right-handed alpha
Helix 44
AE8
B
185 191Right-handed alpha
Helix 45
AE9
B
192 197Right-handed alpha
Helix 46
AF1
B
244 246Right-handed 310
Helix 47
AF2
B
247 266Right-handed alpha
Helix 48
AF3
B
269 271Right-handed 310
Helix 49
AF4
B
308 315Right-handed alpha
Helix 50
AF5
B
342 354Right-handed alpha
Helix 51
AF6
B
392 410Right-handed alpha
Helix 52
AF7
B
424 435Right-handed alpha
Helix 53
AF8
B
444 451Right-handed alpha
Helix 54
AF9
B
470 482Right-handed alpha
Helix 55
AG1
C
68 76Right-handed alpha
Helix 56
AG2
C
87 93Right-handed alpha
Helix 57
AG3
C
100 119Right-handed alpha
Helix 58
AG4
C
185 192Right-handed alpha
Helix 59
AG5
C
192 200Right-handed alpha
Helix 60
AG6
C
244 246Right-handed 310
Helix 61
AG7
C
247 266Right-handed alpha
Helix 62
AG8
C
269 273Right-handed 310
Helix 63
AG9
C
308 315Right-handed alpha
Helix 64
AH1
C
342 353Right-handed alpha
Helix 65
AH2
C
392 409Right-handed alpha
Helix 66
AH3
C
417 419Right-handed 310
Helix 67
AH4
C
424 435Right-handed alpha
Helix 68
AH5
C
444 451Right-handed alpha
Helix 69
AH6
C
470 482Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 9GGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
265 268parallel
Strand 7
A
290 293parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
813 816anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
779 780anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 625first strand
Strand 2
A
747 750anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1131first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 216parallel
Strand 3
B
232 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
297 305anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 416first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 216parallel
Strand 3
C
232 242anti-parallel
Strand 4
C
336 341anti-parallel
Strand 5
C
297 305anti-parallel
Strand 6
C
285 292anti-parallel
Strand 7
C
275 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 386parallel
Strand 3
C
439 442parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il