Analysis of interatomic Contacts of Structural Units in PDB entry:
9GGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GGJ entry

There are 3 chains in PDB entry 9GGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 67	THR 517
B	ARG 64	THR 515
C	SER 68	ASP 422

There are199 helices in PDB entry 9GGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	78	Right-handed alpha
Helix 2	AA2	A	79	84	Right-handed alpha
Helix 3	AA3	A	86	104	Right-handed alpha
Helix 4	AA4	A	108	128	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	139	153	Right-handed alpha
Helix 7	AA7	A	153	158	Right-handed alpha
Helix 8	AA8	A	159	161	Right-handed 310
Helix 9	AA9	A	164	202	Right-handed alpha
Helix 10	AB1	A	221	247	Right-handed alpha
Helix 11	AB2	A	264	272	Right-handed alpha
Helix 12	AB3	A	280	287	Right-handed alpha
Helix 13	AB4	A	288	316	Right-handed alpha
Helix 14	AB5	A	327	330	Right-handed 310
Helix 15	AB6	A	342	367	Right-handed alpha
Helix 16	AB7	A	374	379	Right-handed 310
Helix 17	AB8	A	380	403	Right-handed alpha
Helix 18	AB9	A	408	416	Right-handed alpha
Helix 19	AC1	A	422	433	Right-handed alpha
Helix 20	AC2	A	436	455	Right-handed alpha
Helix 21	AC3	A	457	461	Right-handed 310
Helix 22	AC4	A	462	468	Right-handed alpha
Helix 23	AC5	A	474	481	Right-handed 310
Helix 24	AC6	A	482	490	Right-handed alpha
Helix 25	AC7	A	497	512	Right-handed alpha
Helix 26	AC8	B	68	78	Right-handed alpha
Helix 27	AC9	B	79	84	Right-handed alpha
Helix 28	AD1	B	86	104	Right-handed alpha
Helix 29	AD2	B	108	128	Right-handed alpha
Helix 30	AD3	B	134	138	Right-handed 310
Helix 31	AD4	B	139	153	Right-handed alpha
Helix 32	AD5	B	154	159	Right-handed 310
Helix 33	AD6	B	164	201	Right-handed alpha
Helix 34	AD7	B	221	247	Right-handed alpha
Helix 35	AD8	B	264	272	Right-handed alpha
Helix 36	AD9	B	280	287	Right-handed alpha
Helix 37	AE1	B	288	316	Right-handed alpha
Helix 38	AE2	B	327	330	Right-handed 310
Helix 39	AE3	B	342	367	Right-handed alpha
Helix 40	AE4	B	374	379	Right-handed 310
Helix 41	AE5	B	380	403	Right-handed alpha
Helix 42	AE6	B	408	416	Right-handed alpha
Helix 43	AE7	B	417	419	Right-handed 310
Helix 44	AE8	B	422	433	Right-handed alpha
Helix 45	AE9	B	436	455	Right-handed alpha
Helix 46	AF1	B	457	461	Right-handed 310
Helix 47	AF2	B	462	468	Right-handed alpha
Helix 48	AF3	B	474	481	Right-handed 310
Helix 49	AF4	B	482	490	Right-handed alpha
Helix 50	AF5	B	497	512	Right-handed alpha
Helix 51	AF6	C	69	78	Right-handed alpha
Helix 52	AF7	C	79	84	Right-handed alpha
Helix 53	AF8	C	86	104	Right-handed alpha
Helix 54	AF9	C	108	128	Right-handed alpha
Helix 55	AG1	C	134	138	Right-handed 310
Helix 56	AG2	C	139	153	Right-handed alpha
Helix 57	AG3	C	154	159	Right-handed 310
Helix 58	AG4	C	164	202	Right-handed alpha
Helix 59	AG5	C	221	247	Right-handed alpha
Helix 60	AG6	C	264	272	Right-handed alpha
Helix 61	AG7	C	280	287	Right-handed alpha
Helix 62	AG8	C	288	316	Right-handed alpha
Helix 63	AG9	C	327	330	Right-handed 310
Helix 64	AH1	C	342	367	Right-handed alpha
Helix 65	AH2	C	374	379	Right-handed 310
Helix 66	AH3	C	380	403	Right-handed alpha
Helix 67	AH4	C	408	416	Right-handed alpha
Helix 68	AH5	C	417	420	Right-handed 310
Helix 69	AH6	C	422	433	Right-handed alpha
Helix 70	AH7	C	436	453	Right-handed alpha
Helix 71	AH8	C	457	461	Right-handed 310
Helix 72	AH9	C	462	468	Right-handed alpha
Helix 73	AI1	C	474	481	Right-handed 310
Helix 74	AI2	C	482	490	Right-handed alpha
Helix 75	AI3	C	497	512	Right-handed alpha
Helix 76	AI4	D	69	78	Right-handed alpha
Helix 77	AI5	D	79	84	Right-handed alpha
Helix 78	AI6	D	86	104	Right-handed alpha
Helix 79	AI7	D	108	128	Right-handed alpha
Helix 80	AI8	D	134	138	Right-handed 310
Helix 81	AI9	D	139	153	Right-handed alpha
Helix 82	AJ1	D	154	161	Right-handed 310
Helix 83	AJ2	D	164	202	Right-handed alpha
Helix 84	AJ3	D	221	247	Right-handed alpha
Helix 85	AJ4	D	264	272	Right-handed alpha
Helix 86	AJ5	D	280	287	Right-handed alpha
Helix 87	AJ6	D	288	316	Right-handed alpha
Helix 88	AJ7	D	327	330	Right-handed 310
Helix 89	AJ8	D	342	367	Right-handed alpha
Helix 90	AJ9	D	374	379	Right-handed 310
Helix 91	AK1	D	380	403	Right-handed alpha
Helix 92	AK2	D	408	416	Right-handed alpha
Helix 93	AK3	D	417	421	Right-handed 310
Helix 94	AK4	D	422	433	Right-handed alpha
Helix 95	AK5	D	436	455	Right-handed alpha
Helix 96	AK6	D	457	461	Right-handed 310
Helix 97	AK7	D	462	468	Right-handed alpha
Helix 98	AK8	D	474	481	Right-handed 310
Helix 99	AK9	D	482	490	Right-handed alpha
Helix 100	AL1	D	497	512	Right-handed alpha
Helix 101	AL2	E	68	78	Right-handed alpha
Helix 102	AL3	E	79	84	Right-handed alpha
Helix 103	AL4	E	86	104	Right-handed alpha
Helix 104	AL5	E	108	128	Right-handed alpha
Helix 105	AL6	E	134	138	Right-handed 310
Helix 106	AL7	E	139	153	Right-handed alpha
Helix 107	AL8	E	154	161	Right-handed 310
Helix 108	AL9	E	164	202	Right-handed alpha
Helix 109	AM1	E	221	247	Right-handed alpha
Helix 110	AM2	E	264	272	Right-handed alpha
Helix 111	AM3	E	280	287	Right-handed alpha
Helix 112	AM4	E	288	316	Right-handed alpha
Helix 113	AM5	E	327	330	Right-handed 310
Helix 114	AM6	E	342	367	Right-handed alpha
Helix 115	AM7	E	374	379	Right-handed 310
Helix 116	AM8	E	380	403	Right-handed alpha
Helix 117	AM9	E	408	416	Right-handed alpha
Helix 118	AN1	E	422	433	Right-handed alpha
Helix 119	AN2	E	436	451	Right-handed alpha
Helix 120	AN3	E	457	461	Right-handed 310
Helix 121	AN4	E	462	468	Right-handed alpha
Helix 122	AN5	E	475	481	Right-handed 310
Helix 123	AN6	E	482	490	Right-handed alpha
Helix 124	AN7	E	497	512	Right-handed alpha
Helix 125	AN8	F	68	78	Right-handed alpha
Helix 126	AN9	F	79	84	Right-handed alpha
Helix 127	AO1	F	86	104	Right-handed alpha
Helix 128	AO2	F	108	128	Right-handed alpha
Helix 129	AO3	F	134	138	Right-handed 310
Helix 130	AO4	F	139	153	Right-handed alpha
Helix 131	AO5	F	154	159	Right-handed 310
Helix 132	AO6	F	164	202	Right-handed alpha
Helix 133	AO7	F	221	247	Right-handed alpha
Helix 134	AO8	F	264	272	Right-handed alpha
Helix 135	AO9	F	280	287	Right-handed alpha
Helix 136	AP1	F	288	317	Right-handed alpha
Helix 137	AP2	F	327	330	Right-handed 310
Helix 138	AP3	F	342	367	Right-handed alpha
Helix 139	AP4	F	374	379	Right-handed 310
Helix 140	AP5	F	380	403	Right-handed alpha
Helix 141	AP6	F	408	416	Right-handed alpha
Helix 142	AP7	F	417	419	Right-handed 310
Helix 143	AP8	F	422	433	Right-handed alpha
Helix 144	AP9	F	436	454	Right-handed alpha
Helix 145	AQ1	F	457	461	Right-handed 310
Helix 146	AQ2	F	462	468	Right-handed alpha
Helix 147	AQ3	F	474	481	Right-handed 310
Helix 148	AQ4	F	482	489	Right-handed alpha
Helix 149	AQ5	F	497	513	Right-handed alpha
Helix 150	AQ6	G	69	78	Right-handed alpha
Helix 151	AQ7	G	79	84	Right-handed alpha
Helix 152	AQ8	G	86	104	Right-handed alpha
Helix 153	AQ9	G	108	128	Right-handed alpha
Helix 154	AR1	G	134	138	Right-handed 310
Helix 155	AR2	G	139	153	Right-handed alpha
Helix 156	AR3	G	154	161	Right-handed 310
Helix 157	AR4	G	164	202	Right-handed alpha
Helix 158	AR5	G	221	247	Right-handed alpha
Helix 159	AR6	G	264	272	Right-handed alpha
Helix 160	AR7	G	280	287	Right-handed alpha
Helix 161	AR8	G	288	316	Right-handed alpha
Helix 162	AR9	G	327	330	Right-handed 310
Helix 163	AS1	G	342	367	Right-handed alpha
Helix 164	AS2	G	374	379	Right-handed 310
Helix 165	AS3	G	380	403	Right-handed alpha
Helix 166	AS4	G	408	416	Right-handed alpha
Helix 167	AS5	G	417	421	Right-handed 310
Helix 168	AS6	G	422	433	Right-handed alpha
Helix 169	AS7	G	436	455	Right-handed alpha
Helix 170	AS8	G	457	461	Right-handed 310
Helix 171	AS9	G	462	468	Right-handed alpha
Helix 172	AT1	G	474	481	Right-handed 310
Helix 173	AT2	G	482	490	Right-handed alpha
Helix 174	AT3	G	497	512	Right-handed alpha
Helix 175	AT4	H	68	78	Right-handed alpha
Helix 176	AT5	H	79	84	Right-handed alpha
Helix 177	AT6	H	86	104	Right-handed alpha
Helix 178	AT7	H	108	128	Right-handed alpha
Helix 179	AT8	H	134	138	Right-handed 310
Helix 180	AT9	H	139	153	Right-handed alpha
Helix 181	AU1	H	154	159	Right-handed 310
Helix 182	AU2	H	164	202	Right-handed alpha
Helix 183	AU3	H	221	247	Right-handed alpha
Helix 184	AU4	H	264	272	Right-handed alpha
Helix 185	AU5	H	280	287	Right-handed alpha
Helix 186	AU6	H	288	317	Right-handed alpha
Helix 187	AU7	H	327	330	Right-handed 310
Helix 188	AU8	H	342	367	Right-handed alpha
Helix 189	AU9	H	374	379	Right-handed 310
Helix 190	AV1	H	380	403	Right-handed alpha
Helix 191	AV2	H	408	416	Right-handed alpha
Helix 192	AV3	H	417	419	Right-handed 310
Helix 193	AV4	H	422	433	Right-handed alpha
Helix 194	AV5	H	436	454	Right-handed alpha
Helix 195	AV6	H	457	461	Right-handed 310
Helix 196	AV7	H	462	468	Right-handed alpha
Helix 197	AV8	H	474	481	Right-handed 310
Helix 198	AV9	H	482	490	Right-handed alpha
Helix 199	AW1	H	497	512	Right-handed alpha

There are 22 sheets in PDB entry 9GGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	211	first strand
Strand 2	A	214	220	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	405	407	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	340	341	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	211	first strand
Strand 2	B	214	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	276	277	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	405	407	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	211	first strand
Strand 2	C	214	220	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	276	277	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	405	407	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	211	first strand
Strand 2	D	214	220	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	325	first strand
Strand 2	D	405	407	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	211	first strand
Strand 2	E	214	220	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	323	325	first strand
Strand 2	E	405	407	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	211	first strand
Strand 2	F	214	220	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	325	first strand
Strand 2	F	405	407	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	333	first strand
Strand 2	F	336	341	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	211	first strand
Strand 2	G	214	220	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	249	first strand
Strand 2	G	276	277	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	325	first strand
Strand 2	G	405	407	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	332	first strand
Strand 2	G	340	341	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	211	first strand
Strand 2	H	214	220	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	323	325	first strand
Strand 2	H	405	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GGJ