Analysis of interatomic Contacts of Structural Units in PDB entry:
9GGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9GGM entry

There are 4 chains in PDB entry 9GGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	ALA 536
D	LYS 9	PRO 375
C	PHE 32	ALA 536
B	LYS 9	GLU 185

There are 56 helices in PDB entry 9GGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	57	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed alpha
Helix 3	AA3	A	83	90	Right-handed alpha
Helix 4	AA4	A	108	121	Right-handed alpha
Helix 5	AA5	A	127	129	Right-handed 310
Helix 6	AA6	A	130	141	Right-handed alpha
Helix 7	AA7	A	144	155	Right-handed alpha
Helix 8	AA8	A	162	174	Right-handed alpha
Helix 9	AA9	A	177	189	Right-handed alpha
Helix 10	AB1	A	205	214	Right-handed alpha
Helix 11	AB2	A	220	227	Right-handed alpha
Helix 12	AB3	D	17	23	Right-handed 310
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	47	52	Right-handed alpha
Helix 15	AB6	D	61	66	Right-handed alpha
Helix 16	AB7	D	70	80	Right-handed alpha
Helix 17	AB8	D	90	95	Right-handed alpha
Helix 18	AB9	D	106	115	Right-handed alpha
Helix 19	AC1	D	115	127	Right-handed alpha
Helix 20	AC2	D	155	166	Right-handed alpha
Helix 21	AC3	D	181	188	Right-handed alpha
Helix 22	AC4	D	217	221	Right-handed 310
Helix 23	AC5	D	234	254	Right-handed alpha
Helix 24	AC6	D	265	267	Right-handed 310
Helix 25	AC7	D	278	292	Right-handed alpha
Helix 26	AC8	D	305	322	Right-handed alpha
Helix 27	AC9	D	334	339	Right-handed alpha
Helix 28	AD1	D	356	372	Right-handed alpha
Helix 29	AD2	C	41	57	Right-handed alpha
Helix 30	AD3	C	77	81	Right-handed alpha
Helix 31	AD4	C	83	90	Right-handed alpha
Helix 32	AD5	C	108	121	Right-handed alpha
Helix 33	AD6	C	127	129	Right-handed 310
Helix 34	AD7	C	130	141	Right-handed alpha
Helix 35	AD8	C	144	155	Right-handed alpha
Helix 36	AD9	C	162	174	Right-handed alpha
Helix 37	AE1	C	177	189	Right-handed alpha
Helix 38	AE2	C	205	214	Right-handed alpha
Helix 39	AE3	C	220	227	Right-handed alpha
Helix 40	AE4	B	17	23	Right-handed 310
Helix 41	AE5	B	34	46	Right-handed alpha
Helix 42	AE6	B	47	52	Right-handed alpha
Helix 43	AE7	B	61	66	Right-handed alpha
Helix 44	AE8	B	70	80	Right-handed alpha
Helix 45	AE9	B	90	95	Right-handed alpha
Helix 46	AF1	B	106	115	Right-handed alpha
Helix 47	AF2	B	115	127	Right-handed alpha
Helix 48	AF3	B	155	166	Right-handed alpha
Helix 49	AF4	B	181	188	Right-handed alpha
Helix 50	AF5	B	217	221	Right-handed 310
Helix 51	AF6	B	234	254	Right-handed alpha
Helix 52	AF7	B	265	267	Right-handed 310
Helix 53	AF8	B	278	292	Right-handed alpha
Helix 54	AF9	B	305	322	Right-handed alpha
Helix 55	AG1	B	334	339	Right-handed alpha
Helix 56	AG2	B	356	372	Right-handed alpha

There are 22 sheets in PDB entry 9GGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	C	123	125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	C	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	287	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	258	260	anti-parallel
Strand 4	A	531	534	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	304	307	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	A	327	328	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	349	353	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	375	379	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	394	first strand
Strand 2	A	397	401	anti-parallel
Strand 3	A	418	422	anti-parallel
Strand 4	A	427	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	414	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	449	454	anti-parallel
Strand 3	A	445	446	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	449	454	anti-parallel
Strand 3	A	459	462	anti-parallel
Strand 4	A	469	471	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	494	497	anti-parallel
Strand 3	A	508	511	anti-parallel
Strand 4	A	518	520	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	12	15	parallel
Strand 3	D	132	135	parallel
Strand 4	D	296	301	parallel
Strand 5	D	258	263	parallel
Strand 6	D	171	176	parallel
Strand 7	D	194	201	parallel
Strand 8	D	226	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	287	first strand
Strand 2	C	270	275	anti-parallel
Strand 3	C	258	260	anti-parallel
Strand 4	C	531	534	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	299	first strand
Strand 2	C	302	307	anti-parallel
Strand 3	C	315	318	anti-parallel
Strand 4	C	327	328	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	349	353	anti-parallel
Strand 3	C	366	370	anti-parallel
Strand 4	C	375	379	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	394	first strand
Strand 2	C	397	401	anti-parallel
Strand 3	C	418	422	anti-parallel
Strand 4	C	427	430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	414	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	449	454	anti-parallel
Strand 3	C	445	446	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	449	454	anti-parallel
Strand 3	C	459	462	anti-parallel
Strand 4	C	469	471	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	494	497	anti-parallel
Strand 3	C	508	511	anti-parallel
Strand 4	C	518	520	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	12	15	parallel
Strand 3	B	132	135	parallel
Strand 4	B	296	301	parallel
Strand 5	B	258	263	parallel
Strand 6	B	171	176	parallel
Strand 7	B	194	201	parallel
Strand 8	B	226	229	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9GGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9GGM